; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0021762 (gene) of Snake gourd v1 genome

Gene IDTan0021762
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG01:40960648..40961238
RNA-Seq ExpressionTan0021762
SyntenyTan0021762
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]1.3e-0773.68Show/hide
Query:  HILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        ++ LLTL+VLRDN+A+VS GR PLRQR+WECWA PTTS
Subjt:  HILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-0755.22Show/hide
Query:  DRPRGNRSSVRAKVLVLT-LFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        + PRGNR S++ + +  T +FP          L TLSVL DN+AVVS G+APLRQRRWEC  GPTTS
Subjt:  DRPRGNRSSVRAKVLVLT-LFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]1.9e-0651.43Show/hide
Query:  SGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        SG   + RGNR S++   L  T+            L TLSVLR+N+A VS GR PLRQRRWEC  GPTTS
Subjt:  SGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-0755.22Show/hide
Query:  DRPRGNRSSVRAKVLVLT-LFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        + PRGNR S++ + +  T +FP          L TLSVL DN+AVVS G+APLRQRRWEC  GPTTS
Subjt:  DRPRGNRSSVRAKVLVLT-LFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

TYK27262.1 hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]7.6e-0846.34Show/hide
Query:  SGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLL------------TLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        SG   + RGNR S++   L  T+  D+M ++  + L             TLSVLR+N+A VS GR PLRQRRWEC  GPTTS
Subjt:  SGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLL------------TLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein6.3e-0873.68Show/hide
Query:  HILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        ++ LLTL+VLRDN+A+VS GR PLRQR+WECWA PTTS
Subjt:  HILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

A0A5A7T7M6 Reverse transcriptase6.3e-0855.22Show/hide
Query:  DRPRGNRSSVRAKVLVLT-LFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        + PRGNR S++ + +  T +FP          L TLSVL DN+AVVS G+APLRQRRWEC  GPTTS
Subjt:  DRPRGNRSSVRAKVLVLT-LFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

A0A5A7TDY3 Uncharacterized protein9.1e-0751.43Show/hide
Query:  SGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        SG   + RGNR S++   L  T+            L TLSVLR+N+A VS GR PLRQRRWEC  GPTTS
Subjt:  SGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

A0A5D3BTP3 Reverse transcriptase6.3e-0855.22Show/hide
Query:  DRPRGNRSSVRAKVLVLT-LFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        + PRGNR S++ + +  T +FP          L TLSVL DN+AVVS G+APLRQRRWEC  GPTTS
Subjt:  DRPRGNRSSVRAKVLVLT-LFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

A0A5D3DUS7 Uncharacterized protein3.7e-0846.34Show/hide
Query:  SGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLL------------TLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        SG   + RGNR S++   L  T+  D+M ++  + L             TLSVLR+N+A VS GR PLRQRRWEC  GPTTS
Subjt:  SGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLL------------TLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGTTCTGGTTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTGTACGGGCCAAAGTTCTAGTTCTAACACTATTTCCAGATTTTATGAACAAGCTGAGTCATAT
ATTGTTGTTGACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGT
AG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGTTCTGGTTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTGTACGGGCCAAAGTTCTAGTTCTAACACTATTTCCAGATTTTATGAACAAGCTGAGTCATAT
ATTGTTGTTGACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGT
AG
Protein sequenceShow/hide protein sequence
MFGSGLFDRPRGNRSSVRAKVLVLTLFPDFMNKLSHILLLTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS