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Tan0021809 (gene) of Snake gourd v1 genome

Gene IDTan0021809
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMediator of RNA polymerase II transcription subunit 32
Genome locationLG05:16910600..16913108
RNA-Seq ExpressionTan0021809
SyntenyTan0021809
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009631 - cold acclimation (biological process)
GO:0010150 - leaf senescence (biological process)
GO:0048364 - root development (biological process)
GO:0016592 - mediator complex (cellular component)
InterPro domainsIPR033244 - Mediator of RNA polymerase II transcription subunit 32


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045925.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]1.2e-6897.26Show/hide
Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
TYK13665.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]3.5e-6896.58Show/hide
Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
XP_004148855.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus]2.0e-6897.26Show/hide
Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ATT LPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
XP_008457936.1 PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo]3.5e-6896.58Show/hide
Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
XP_038902813.1 mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida]3.1e-6997.95Show/hide
Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTG+PPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
TrEMBL top hitse value%identityAlignment
A0A0A0LIN7 Uncharacterized protein9.8e-6997.26Show/hide
Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ATT LPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
A0A1S3C6T6 mediator of RNA polymerase II transcription subunit 321.7e-6896.58Show/hide
Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
A0A5A7TWZ7 Mediator of RNA polymerase II transcription subunit 325.7e-6997.26Show/hide
Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
A0A5D3CQ46 Mediator of RNA polymerase II transcription subunit 321.7e-6896.58Show/hide
Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAAASASAHSH SAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
A0A6J1JH28 mediator of RNA polymerase II transcription subunit 32-like isoform X22.4e-6795.97Show/hide
Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAA--TTGLPPIS
        MDSLVDSLNNAYQEFV+GAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAA  TTGLPPIS
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAA--TTGLPPIS

Query:  AVRLEQMSKAVRWLVIELQHGSG-AAASASAHSHPSAPFDARFTEDATQ
        A+RLEQMSKAVRWLVIELQHGSG AAASASAHSHPSAPFDARFTEDATQ
Subjt:  AVRLEQMSKAVRWLVIELQHGSG-AAASASAHSHPSAPFDARFTEDATQ
SwissProt top hitse value%identityAlignment
Q84VW5 Mediator of RNA polymerase II transcription subunit 326.6e-4668.63Show/hide
Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEEFVESVKQRIGSECLVDEATG   + AG    AA TG    
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
Arabidopsis top hitse value%identityAlignment
AT1G11760.1 MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).4.7e-4768.63Show/hide
Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEEFVESVKQRIGSECLVDEATG   + AG    AA TG    
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTCCTTGAAGCAAATGAAACCTCTGGGGCTCAGAAGACAGCAGCAAC
AGATGCTGCTCTCGAGAATTTTAAGCAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCGGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATAGGTTCAGAGTGTC
TGGTTGATGAGGCCACTGGTTCACTGGCCGGCAAGTCTGGGCAGGCCGCCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGCTGGAACAGATGAGCAAAGCTGTGAGA
TGGCTCGTGATTGAGTTGCAGCATGGGTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCACCCTTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATA
G
mRNA sequenceShow/hide mRNA sequence
CTCCGGACCTCGGCGATAGCCTCGCTCGATAAGCCCTCTTTTCAGTCTTCAAGTTTGCCTTCGCTTCGCATAGAGCAGGTGACGCGCAGATCGATTGAAGATCTGCAGTT
TCTGAATCCTTCACTCTCTACTGCTCTCCGCAGTTCGCGGCAGAAGATTTGCGGTTTGCCTCGCCCATTTTCTCTTTCGGTATTCTGATATGGACAGCCTAGTGGACTCT
TTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTCCTTGAAGCAAATGAAACCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTCGAGAATTT
TAAGCAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCGGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATAGGTTCAGAGTGTCTGGTTGATGAGGCCACTGGTT
CACTGGCCGGCAAGTCTGGGCAGGCCGCCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGCTGGAACAGATGAGCAAAGCTGTGAGATGGCTCGTGATTGAGTTGCAG
CATGGGTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCACCCTTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAGGTACCTATCTTATAAAGCTA
TAACATAACAAGTATTTTGTGTTTTGCATGAAATGACTGTTGGTGTGGGGAATTTACTGTGCAAGATAATCATCTTAAACTTTGAGTGAATGTGAAAAAATGAAGCCGTT
TCTCCTGTATCTACAGTTAACTAATATCCTTTCATGTTTCTTTGTACTTGTTTGAGTTGTTTTTCTTGGAGGTTGGGTGCAGTGAAATTGTCTCTCTCTGTATTTGTGCG
TGTATATCTATCTTTTCTCCCACAATTTTTGTAAGACCAGCCGAGATCACATTCATTATTGTTGTTCTAGACGTAAGAAATATATTAAAGAATGAAAGTTATTTTATCAT
ACCTCCTCAATCTGGAGATTTAGAAGTTTGAATCTCCCACCTCCACATGTTGTTGAACTCAAAACTTAAACGTTATGGCATTTCGTC
Protein sequenceShow/hide protein sequence
MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVR
WLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ