CuGenDBv2

Gene ID	Tan0021820
Organism	Trichosanthes anguina (Snake gourd v1)
Description	CST complex subunit STN1
Genome location	LG07:74364043..74364915
RNA-Seq Expression	Tan0021820
Synteny	Tan0021820
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0016310 - phosphorylation (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003697 - single-stranded DNA binding (molecular function) GO:0004672 - protein kinase activity (molecular function)
InterPro domains	IPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type IPR012340 - Nucleic acid-binding, OB-fold IPR040260 - Replication factor A protein-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0057432.1 CST complex subunit STN1 [Cucumis melo var. makuwa]

1.4e-68

77.09

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Query:  MDQQQ--PLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYF
        M+Q+Q     LY TH+KLLGFDLNSL QN           SSSD+VSFSRKGYAVSC EIVGVVV RDLKPN+FLKF VDDGTA VGCILWLNHLTS YF
Subjt:  MDQQQ--PLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYF

Query:  ASRHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT
        ASRH PDVRI+ +MA HFAA+I+VGIV RVRGK+SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDL P PT
Subjt:  ASRHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT

KAG6571457.1 CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-73

83.52

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Query:  MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFAS
        M+QQ+   LYHTHIKLLGFDLNSLTQ       SSSSSSSSDAVSFSR+GYAVSC EIVGVVV RDLKPN+FL+F VDDGT  V CILWLNHLTSPYFA 
Subjt:  MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFAS

Query:  RHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP
        RHQPDVRIIGNMA HFAA+I+VGIVARVRGKVSSYRGVVQITVSDVVVE+DPNAEILHWLD MRLALKCYDL P P
Subjt:  RHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP

KAG7011223.1 CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-73

83.52

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Query:  MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFAS
        M+QQ+   LYHTHIKLLGFDLNSLTQ       SSSSSSSSDAVSFSR+GYAVSC EIVGVVV RDLKPN+FL+F VDDGT  V CILWLNHLTSPYFA 
Subjt:  MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFAS

Query:  RHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP
        RHQPDVRIIGNMA HFAA+I+VGIVARVRGKVSSYRGVVQITVSDVVVE+DPNAEILHWLD MRLALKCYDL P P
Subjt:  RHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP

XP_022963452.1 LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata]

9.6e-73

81.82

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Query:  MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFAS
        M+QQ+   LYHTHIKLLGFDLNSLTQ        S+SSSSSDAVSFSR+GYAVSC EIVGVVV RDLKPN+FL+F VDDGT  V CILWLNHLTSPYFAS
Subjt:  MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFAS

Query:  RHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP
        RHQPDVRIIGNMA HFAA+I+VGIVARVRG+VSSYRGVVQ+TVSDVVVE+DPNAEILHWLD MRLALKCYDL P P
Subjt:  RHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP

XP_023553655.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo]

4.3e-73

82.39

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Query:  MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFAS
        M+QQ+   LYHTHIKLLGFDLNSL Q        SSSSSSSDAVSFSR+GYAVSC E+VGVVV RDLKPN+FL+F VDDGT  V CILWLNHLTSPYFAS
Subjt:  MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFAS

Query:  RHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP
        RHQPDVRIIGNMA HFAA+I+VGIVARVRGKVSSYRGVVQITVSDVVVE+DPNAEILHWLD MRLALKCYDL P P
Subjt:  RHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNV0 OB domain-containing protein

7.7e-68

79.29

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Query:  LYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRI
        LY TH+KLL FDLNSL Q           +SSSD+VSFSRKGYAVSC EIVGVVV RDLKPN+FLKF VDDGTA VGCILWLNHLTS YFASRH  DVRI
Subjt:  LYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRI

Query:  IGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT
        +G+MA HFAA+I+VGIV RVRGK+SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDL PTPT
Subjt:  IGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT

A0A1S3BLT5 CST complex subunit STN1

7.0e-69

77.09

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Query:  MDQQQ--PLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYF
        M+Q+Q     LY TH+KLLGFDLNSL QN           SSSD+VSFSRKGYAVSC EIVGVVV RDLKPN+FLKF VDDGTA VGCILWLNHLTS YF
Subjt:  MDQQQ--PLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYF

Query:  ASRHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT
        ASRH PDVRI+ +MA HFAA+I+VGIV RVRGK+SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDL P PT
Subjt:  ASRHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT

A0A5D3E3H2 CST complex subunit STN1

7.0e-69

77.09

Show/hide

Query:  MDQQQ--PLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYF
        M+Q+Q     LY TH+KLLGFDLNSL QN           SSSD+VSFSRKGYAVSC EIVGVVV RDLKPN+FLKF VDDGTA VGCILWLNHLTS YF
Subjt:  MDQQQ--PLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYF

Query:  ASRHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT
        ASRH PDVRI+ +MA HFAA+I+VGIV RVRGK+SSYRG+VQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDL P PT
Subjt:  ASRHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT

A0A6J1HFA9 LOW QUALITY PROTEIN: CST complex subunit STN1

4.7e-73

81.82

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Query:  MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFAS
        M+QQ+   LYHTHIKLLGFDLNSLTQ        S+SSSSSDAVSFSR+GYAVSC EIVGVVV RDLKPN+FL+F VDDGT  V CILWLNHLTSPYFAS
Subjt:  MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFAS

Query:  RHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP
        RHQPDVRIIGNMA HFAA+I+VGIVARVRG+VSSYRGVVQ+TVSDVVVE+DPNAEILHWLD MRLALKCYDL P P
Subjt:  RHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTP

A0A6J1HUX0 CST complex subunit STN1

1.7e-67

84.05

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Query:  MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFAS
        M+QQ+   LYHTHIKLLGFDLNSLTQ        SSSSSSSDAVSFSR+G+AVSCAEIVGVVVSRDLKPN+FL+F VDDGT  V CILWLNHLTSPYFAS
Subjt:  MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFAS

Query:  RHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSM
        RHQPDVRIIGNMA HFAA+I+VGIVARVRGKVSSYRGVVQITVSDVVVE+DPNAEILHWLD M
Subjt:  RHQPDVRIIGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSM

SwissProt top hits

e value

%identity

Alignment

Q9LMK5 CST complex subunit STN1

1.0e-32

49.38

Show/hide

Query:  LYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRI
        L  TH KL+  D+  LTQ+ + S+S S              G  VS  EIVG +VSRDL P KFLKF VDDGT  V C++WLN LTS YF+      + +
Subjt:  LYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRI

Query:  IGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCY
        + + A   AA+I++G VARVRG+V SYRGV+QIT +  V E DPNAEILHWL+ ++L   CY
Subjt:  IGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCY

Arabidopsis top hits

e value

%identity

Alignment

AT1G07130.1 Nucleic acid-binding, OB-fold-like protein

7.2e-34

49.38

Show/hide

Query:  LYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRI
        L  TH KL+  D+  LTQ+ + S+S S              G  VS  EIVG +VSRDL P KFLKF VDDGT  V C++WLN LTS YF+      + +
Subjt:  LYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRI

Query:  IGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCY
        + + A   AA+I++G VARVRG+V SYRGV+QIT +  V E DPNAEILHWL+ ++L   CY
Subjt:  IGNMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACCAACAGCAACCCCTCTACCTCTACCACACCCACATCAAGCTCCTGGGTTTCGACCTTAATTCACTCACCCAAAACTCCTCCTCCTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCCGATGCAGTTTCTTTCTCTCGCAAAGGTTATGCCGTTTCGTGTGCAGAGATCGTCGGCGTTGTGGTCTCTCGCGACCTGAAACCTAACAAGTTTCTCA
AATTTTGCGTCGACGATGGCACTGCTAGTGTTGGCTGTATCCTGTGGCTAAACCATCTCACATCGCCTTATTTTGCTTCACGCCACCAGCCAGATGTTCGAATAATTGGA
AATATGGCGATCCATTTCGCAGCTGAAATTAAAGTTGGGATTGTTGCTAGGGTTCGGGGGAAGGTGAGCAGCTATAGGGGAGTGGTGCAGATCACGGTGTCAGATGTTGT
GGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCCATGAGGTTGGCTCTAAAGTGTTATGACCTCTTCCCTACGCCCACATAG

mRNA sequence

Show/hide mRNA sequence

CATGTATTTACCCGAAAAGCCCAAATATAAGCCCAATGGGCCATAACTTTAACTCCGTCTGAGCCAGAGAACCACCGTAGGTTTCCGATGGACCAACAGCAACCCCTCTA
CCTCTACCACACCCACATCAAGCTCCTGGGTTTCGACCTTAATTCACTCACCCAAAACTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGATGCAGTTT
CTTTCTCTCGCAAAGGTTATGCCGTTTCGTGTGCAGAGATCGTCGGCGTTGTGGTCTCTCGCGACCTGAAACCTAACAAGTTTCTCAAATTTTGCGTCGACGATGGCACT
GCTAGTGTTGGCTGTATCCTGTGGCTAAACCATCTCACATCGCCTTATTTTGCTTCACGCCACCAGCCAGATGTTCGAATAATTGGAAATATGGCGATCCATTTCGCAGC
TGAAATTAAAGTTGGGATTGTTGCTAGGGTTCGGGGGAAGGTGAGCAGCTATAGGGGAGTGGTGCAGATCACGGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTG
AAATTCTGCATTGGTTGGATTCCATGAGGTTGGCTCTAAAGTGTTATGACCTCTTCCCTACGCCCACATAGCTGTAGATTCCAATGTTTTAAAATGTTATCTCTACTCTT
GTGCTTTTATTTCTGAATGCAGAAAAGATTCGCCTTTTTTTTAGCCTTACTGTCCAAATTTTGCATAAGAGGCTTGATCTTTGAAATGATTATATATGAAAGCTAAGTTG
CTACTGCCTGTGTTTTGTTTGTTGGAAATGGCTAAAATTGAACGAGGAAATTAATGACAAATAACCAGGTAACAATTTTTTTTTGCATTGGATGTCATCAAAT

Protein sequence

Show/hide protein sequence

MDQQQPLYLYHTHIKLLGFDLNSLTQNSSSSSSSSSSSSSSDAVSFSRKGYAVSCAEIVGVVVSRDLKPNKFLKFCVDDGTASVGCILWLNHLTSPYFASRHQPDVRIIG
NMAIHFAAEIKVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLFPTPT

Tan0021820 (gene) of Snake gourd v1 genome