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Tan0021880 (gene) of Snake gourd v1 genome

Gene IDTan0021880
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L33, chloroplastic
Genome locationLG05:67368297..67368496
RNA-Seq ExpressionTan0021880
SyntenyTan0021880
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001705 - Ribosomal protein L33
IPR011332 - Zinc-binding ribosomal protein
IPR038584 - Ribosomal protein L33 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_009004065.1 ribosomal protein L33 [Cucumis hystrix]4.8e-1771.21Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKDAR+TVI ECTRCVRNG               NRHNTP+RLELRKFCPRCYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
YP_009456082.1 ribosomal protein L33 [Momordica charantia]4.8e-1771.21Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKDAR+TVI ECTRCVRNG               NRHNTP+RLELRKFCPRCYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
YP_009752264.1 ribosomal protein L33 [Trichosanthes baviensis]4.8e-1771.21Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKDAR+TVI ECTRCVRNG               NRHNTP+RLELRKFCPRCYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
YP_009752433.1 ribosomal protein L33 [Trichosanthes tricuspidata]4.8e-1771.21Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKDAR+TVI ECTRCVRNG               NRHNTP+RLELRKFCPRCYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
YP_009753895.1 ribosomal protein L33 [Trichosanthes lobata]3.7e-1772.73Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKDARITVI ECTRCVRNG               NRHNTP+RLELRKFCPRCYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
TrEMBL top hitse value%identityAlignment
A0A1X9Q1M1 50S ribosomal protein L33, chloroplastic2.3e-1771.21Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKDAR+TVI ECTRCVRNG               NRHNTP+RLELRKFCPRCYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
A0A218KG47 50S ribosomal protein L33, chloroplastic2.3e-1771.21Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKDAR+TVI ECTRCVRNG               NRHNTP+RLELRKFCPRCYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
A0A410HFB3 50S ribosomal protein L33, chloroplastic2.3e-1771.21Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKDAR+TVI ECTRCVRNG               NRHNTP+RLELRKFCPRCYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
A0A6H0EV38 50S ribosomal protein L33, chloroplastic1.8e-1772.73Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKDARITVI ECTRCVRNG               NRHNTP+RLELRKFCPRCYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
G3ETR8 50S ribosomal protein L33, chloroplastic2.3e-1771.21Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKDAR+TVI ECTRCVRNG               NRHNTP+RLELRKFCPRCYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
SwissProt top hitse value%identityAlignment
B1A956 50S ribosomal protein L33, chloroplastic2.7e-1866.67Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKDAR+T+I ECT CVRNG               NRHNTP+RLELRKFCP CYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
Q0G9U1 50S ribosomal protein L33, chloroplastic4.5e-1868.18Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKD RITVI ECT CVRNG               NRHNTPNRLELRKFCP CYKHT+H EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
Q2QD68 50S ribosomal protein L33, chloroplastic6.3e-2071.21Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKDAR+TVI ECTRCVRNG               NRHNTP+RLELRKFCPRCYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
Q68RY5 50S ribosomal protein L33, chloroplastic1.2e-1869.7Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKD RITVI ECT CVRNG               NRHNTPNRLELRKFCP CYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
Q7FNS6 50S ribosomal protein L33, chloroplastic1.7e-1765.15Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKD R+TVI ECT CVRN                NRHNTPNRLEL+KFCP CYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
Arabidopsis top hitse value%identityAlignment
ATCG00640.1 ribosomal protein L333.6e-1863.64Show/hide
Query:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK
        MAKGKD R+T+I ECT CVRN                NRHNTP+RLELRKFCP CYKHTIH EIKK
Subjt:  MAKGKDARITVIFECTRCVRNG---------------NRHNTPNRLELRKFCPRCYKHTIHREIKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGGGTAAAGATGCCCGAATAACAGTTATTTTTGAATGTACTCGTTGTGTTCGAAACGGTAATCGACACAATACGCCTAATCGATTGGAATTGAGAAAATTTTG
TCCTCGTTGTTACAAACATACGATTCATAGGGAGATAAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGGGTAAAGATGCCCGAATAACAGTTATTTTTGAATGTACTCGTTGTGTTCGAAACGGTAATCGACACAATACGCCTAATCGATTGGAATTGAGAAAATTTTG
TCCTCGTTGTTACAAACATACGATTCATAGGGAGATAAAGAAATAG
Protein sequenceShow/hide protein sequence
MAKGKDARITVIFECTRCVRNGNRHNTPNRLELRKFCPRCYKHTIHREIKK