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Tan0021882 (gene) of Snake gourd v1 genome

Gene IDTan0021882
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionF-box protein
Genome locationLG09:61608637..61611641
RNA-Seq ExpressionTan0021882
SyntenyTan0021882
Gene Ontology termsGO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
InterPro domainsIPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600184.1 F-box protein, partial [Cucurbita argyrosperma subsp. sororia]3.0e-6490.48Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCCQMLEELT+CDHRMDNG LAGLSY ENLKTLRI+SCRRIDPNPGPDEYLSPCPALERLH QNCQLRDK+SAKALFITC AAREIF  
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWGL DD+FSFASHCWRVKFLSL+G
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG

XP_022141321.1 F-box protein At5g51380-like [Momordica charantia]3.2e-6692.86Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCCQMLEELT+CDHRMDNG LAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALE LH QNCQLRDKRSAKALF+TCGAAREIF  
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWG+VDDIFSFASHCWRV+FLSLEG
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG

XP_022942171.1 F-box protein At5g51370-like [Cucurbita moschata]3.0e-6490.48Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCCQMLEELT+CDHRMDNG LAGLSY ENLKTLRI+SCRRIDPNPGPDEYLSPCPALERLH QNCQLRDK+SAKALFITC AAREIF  
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWGL DD+FSFASHCWRVKFLSL+G
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG

XP_023528939.1 F-box protein At5g51370-like [Cucurbita pepo subsp. pepo]6.1e-6591.27Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCCQMLEELT+CDHRMDNG LAGLSY ENLKTLRI+SCRRIDPNPGPDEYLSPCPALERLH QNCQLRDK+SAKALFITC AAREIF G
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWGL DD+FSFASHCWRVKFLSL+G
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG

XP_038879973.1 F-box protein At5g51380-like [Benincasa hispida]3.6e-6591.27Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCCQMLEELT+CDHRMDNG LAGLS+CENLKTLRIMSCR+IDPNPGPDEYLSPCPALERLH QNCQLRD++SA+ALFITCGAAREIF  
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWGLVD IFSFASHCWRVKFLSLEG
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG

TrEMBL top hitse value%identityAlignment
A0A0A0KZ56 Uncharacterized protein7.3e-6489.68Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCCQMLEELT+CDHRMD+G LA LSYCENLKTLRIMSCR+IDPNPGPDEYLSPCPALERLH  NCQLR++RSAKALF+TCGAAREIFF 
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWGLVD IFSFASH WRVKFLSLEG
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG

A0A6J1CIT9 F-box protein At5g51380-like1.6e-6692.86Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCCQMLEELT+CDHRMDNG LAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALE LH QNCQLRDKRSAKALF+TCGAAREIF  
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWG+VDDIFSFASHCWRV+FLSLEG
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG

A0A6J1FN36 F-box protein At5g51370-like1.5e-6490.48Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCCQMLEELT+CDHRMDNG LAGLSY ENLKTLRI+SCRRIDPNPGPDEYLSPCPALERLH QNCQLRDK+SAKALFITC AAREIF  
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWGL DD+FSFASHCWRVKFLSL+G
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG

A0A6J1HUD6 F-box protein At5g51380-like5.6e-6489.68Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCCQMLEELT+CDHRMDNG LAGLSY ENLKTLRI+SCRRIDPNPGPDEYLSPCPALERLH QNCQLRDK+SAKALFITC AAREIF  
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWGL +D+FSFASHCWRVKFLSL+G
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG

A0A6J1J503 F-box protein At5g51380-like2.8e-6389.68Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFD IKAIGQCCQMLEELT+CDHRMDNG LAGLSYCENLKTLRIMSCR+IDPNPGPDEYLSPC ALERL+ QNCQL DK+S +ALFITCGAAREIF  
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWGLVDDIFSFASHCWRVKFLSLEG
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG

SwissProt top hitse value%identityAlignment
Q8VYT5 F-box protein At5g076702.0e-4265.38Show/hide
Query:  VSVEGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLS-PCPALERLHWQNCQLRDKRSAKALFITCGAARE
        V  EG FDGIK IG+CCQMLEELTVCD++M++G L GL YCENLKTL+++SC++ID +  PDE LS  CPALERL  + CQLRDK + KALF  C AARE
Subjt:  VSVEGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLS-PCPALERLHWQNCQLRDKRSAKALFITCGAARE

Query:  IFFGDCWGLVDDIFSFASHCWRVKFLSLEG
        I F DCWGL +DIFS A    RVK L LEG
Subjt:  IFFGDCWGLVDDIFSFASHCWRVKFLSLEG

Q9FGN3 F-box protein At5g513802.4e-4060.32Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCC++LEEL++CDHRMD+G +A LSY E+LKTL I SCR+ID +PGP + L  CPALE L  + C L DK   +ALF  C    ++   
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWGL DD FS A    RV+FLSLEG
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG

Q9FGN4 F-box protein At5g513705.8e-4261.9Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCC++LEEL++CDHRMD+G +A LSY E+LK LRI SCR+ID +PGP++ L  CPA+E L  + C L DK   KALF  C  A E+   
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWGL DD FS A    RV+FLSLEG
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG

Arabidopsis top hitse value%identityAlignment
AT5G07670.1 RNI-like superfamily protein1.4e-4365.38Show/hide
Query:  VSVEGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLS-PCPALERLHWQNCQLRDKRSAKALFITCGAARE
        V  EG FDGIK IG+CCQMLEELTVCD++M++G L GL YCENLKTL+++SC++ID +  PDE LS  CPALERL  + CQLRDK + KALF  C AARE
Subjt:  VSVEGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLS-PCPALERLHWQNCQLRDKRSAKALFITCGAARE

Query:  IFFGDCWGLVDDIFSFASHCWRVKFLSLEG
        I F DCWGL +DIFS A    RVK L LEG
Subjt:  IFFGDCWGLVDDIFSFASHCWRVKFLSLEG

AT5G51370.1 RNI-like superfamily protein8.0e-3961.95Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCC++LEEL++CDHRMD+G +A LSY E+LK LRI SCR+ID +PGP++ L  CPA+E L  + C L DK   KALF  C  A E+   
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFA
        DCWGL DD FS A
Subjt:  DCWGLVDDIFSFA

AT5G51370.2 RNI-like superfamily protein4.1e-4361.9Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCC++LEEL++CDHRMD+G +A LSY E+LK LRI SCR+ID +PGP++ L  CPA+E L  + C L DK   KALF  C  A E+   
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWGL DD FS A    RV+FLSLEG
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG

AT5G51380.1 RNI-like superfamily protein1.7e-4160.32Show/hide
Query:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG
        EGSFDGIKAIGQCC++LEEL++CDHRMD+G +A LSY E+LKTL I SCR+ID +PGP + L  CPALE L  + C L DK   +ALF  C    ++   
Subjt:  EGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFITCGAAREIFFG

Query:  DCWGLVDDIFSFASHCWRVKFLSLEG
        DCWGL DD FS A    RV+FLSLEG
Subjt:  DCWGLVDDIFSFASHCWRVKFLSLEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTGGCACTTGTCGGGAGTACATTGGTTATGGCAGATGTGATGAAGGTATCTGTGGAGGGAAGTTTTGATGGCATTAAGGCAATTGGACAGTGCTGCCAAATGTT
AGAGGAACTAACAGTCTGTGATCATAGGATGGACAATGGACGGTTGGCTGGGCTTTCATATTGTGAGAATTTAAAGACTTTGAGAATCATGTCATGTAGGAGGATTGATC
CGAACCCTGGACCTGATGAATATTTGAGTCCCTGTCCTGCCCTTGAGCGGTTGCATTGGCAGAATTGTCAACTACGAGATAAAAGGAGTGCTAAAGCTCTGTTTATTACT
TGTGGGGCAGCGAGGGAGATTTTCTTCGGTGATTGCTGGGGATTGGTGGATGACATATTCAGCTTTGCAAGTCATTGCTGGAGGGTGAAGTTCCTTTCTCTCGAAGGATG
A
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTGGCACTTGTCGGGAGTACATTGGTTATGGCAGATGTGATGAAGGTATCTGTGGAGGGAAGTTTTGATGGCATTAAGGCAATTGGACAGTGCTGCCAAATGTT
AGAGGAACTAACAGTCTGTGATCATAGGATGGACAATGGACGGTTGGCTGGGCTTTCATATTGTGAGAATTTAAAGACTTTGAGAATCATGTCATGTAGGAGGATTGATC
CGAACCCTGGACCTGATGAATATTTGAGTCCCTGTCCTGCCCTTGAGCGGTTGCATTGGCAGAATTGTCAACTACGAGATAAAAGGAGTGCTAAAGCTCTGTTTATTACT
TGTGGGGCAGCGAGGGAGATTTTCTTCGGTGATTGCTGGGGATTGGTGGATGACATATTCAGCTTTGCAAGTCATTGCTGGAGGGTGAAGTTCCTTTCTCTCGAAGGATG
A
Protein sequenceShow/hide protein sequence
MVVALVGSTLVMADVMKVSVEGSFDGIKAIGQCCQMLEELTVCDHRMDNGRLAGLSYCENLKTLRIMSCRRIDPNPGPDEYLSPCPALERLHWQNCQLRDKRSAKALFIT
CGAAREIFFGDCWGLVDDIFSFASHCWRVKFLSLEG