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Tan0021932 (gene) of Snake gourd v1 genome

Gene IDTan0021932
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG10:708790..709185
RNA-Seq ExpressionTan0021932
SyntenyTan0021932
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4391976.1 hypothetical protein F8388_004305 [Cannabis sativa]6.6e-1838.21Show/hide
Query:  STVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICS
        +TV SLL    EW++D +  YF ++DV  IL IP    H+ D ++W +   G + VKS YR+  +  L     SSN +    +WK  W + +P R+K+  
Subjt:  STVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICS

Query:  WKIIQSCLPMKDNLIRRGLEINP
        WK+ ++ LP K NL+ RG++INP
Subjt:  WKIIQSCLPMKDNLIRRGLEINP

KAF4401718.1 hypothetical protein G4B88_000766 [Cannabis sativa]1.3e-1836.67Show/hide
Query:  VRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWK
        +  L+  DG+W +DK++++F E+D+  +  IP   ++  D + W Y P G + VKS YR+G +  L     SSN E +  +WK LWS+ +P R+K+  W+
Subjt:  VRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWK

Query:  IIQSCLPMKDNLIRRGLEIN
        +  + LP K NL  RG+++N
Subjt:  IIQSCLPMKDNLIRRGLEIN

XP_023905045.1 uncharacterized protein LOC112016795 [Quercus suber]1.7e-1838.58Show/hide
Query:  STVRSLLKE-DGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGL---QQRLAQEASSSNSEGVKNFWKSLWSIQIPHRI
        +TV  L+ E  GEW+VD ++  F  DD   IL IPR    N D ++W Y P+G FTV S Y++ L   Q +  +E S ++S     FW+ +WS++IP+++
Subjt:  STVRSLLKE-DGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGL---QQRLAQEASSSNSEGVKNFWKSLWSIQIPHRI

Query:  KICSWKIIQSCLPMKDNLIRRGLEINP
        K  +W+  ++ LP K NL  RG+  +P
Subjt:  KICSWKIIQSCLPMKDNLIRRGLEINP

XP_023907624.1 uncharacterized protein LOC112019319 [Quercus suber]1.7e-1841.32Show/hide
Query:  STVRSLLKE-DGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGL-QQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKI
        S V +LL E  GEW  D ++R F  ++   IL IPR   H ND I+W Y P+GIFTV S Y++ L     A     S++   + FW++LWS+ IP++IK 
Subjt:  STVRSLLKE-DGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGL-QQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKI

Query:  CSWKIIQSCLPMKDNLIRRGL
         +W+  ++ LP K NL  RG+
Subjt:  CSWKIIQSCLPMKDNLIRRGL

XP_030505362.1 uncharacterized protein LOC115720349 [Cannabis sativa]8.6e-1838.21Show/hide
Query:  STVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICS
        +T+  LL E+G+W  D I  YF +DD+  IL  P   I   D + W  + +G + VKS YR+  +  +      SN + +K +WK  W +Q+P RIK+  
Subjt:  STVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICS

Query:  WKIIQSCLPMKDNLIRRGLEINP
        WK+  + LP K NLI RG++I+P
Subjt:  WKIIQSCLPMKDNLIRRGLEINP

TrEMBL top hitse value%identityAlignment
A0A7J6I3Y4 Uncharacterized protein6.4e-1936.67Show/hide
Query:  VRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWK
        +  L+  DG+W +DK++++F E+D+  +  IP   ++  D + W Y P G + VKS YR+G +  L     SSN E +  +WK LWS+ +P R+K+  W+
Subjt:  VRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWK

Query:  IIQSCLPMKDNLIRRGLEIN
        +  + LP K NL  RG+++N
Subjt:  IIQSCLPMKDNLIRRGLEIN

A0A803PLN3 Uncharacterized protein3.7e-1934.68Show/hide
Query:  QSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKIC
        Q+ +   + +DG+W +D+++++F E+D+  +  IP   ++  D + W Y P G + VKS YR+G +  +     SSN E    +WK LWS+ +P R+K+ 
Subjt:  QSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKIC

Query:  SWKIIQSCLPMKDNLIRRGLEINP
         W++  + LP K NL  RG+++NP
Subjt:  SWKIIQSCLPMKDNLIRRGLEINP

A0A803PPQ0 Uncharacterized protein5.8e-2037.5Show/hide
Query:  PEL-AQSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPH
        PEL  Q+ +  L+  DG+W +DK++++F E+D+  +  IP   ++  D + W Y P G + VKS YR+G +  L     SSN E +  +WK LWS+ +P 
Subjt:  PEL-AQSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPH

Query:  RIKICSWKIIQSCLPMKDNLIRRGLEIN
        R+K+  W++  + LP K NL  RG+++N
Subjt:  RIKICSWKIIQSCLPMKDNLIRRGLEIN

A0A803PR93 Uncharacterized protein5.8e-2037.5Show/hide
Query:  PEL-AQSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPH
        PEL  Q+ +  L+  DG+W +DK++++F E+D+  +  IP   ++  D + W Y P G + VKS YR+G +  L     SSN E +  +WK LWS+ +P 
Subjt:  PEL-AQSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPH

Query:  RIKICSWKIIQSCLPMKDNLIRRGLEIN
        R+K+  W++  + LP K NL  RG+++N
Subjt:  RIKICSWKIIQSCLPMKDNLIRRGLEIN

A0A803Q6D6 Uncharacterized protein2.2e-1935.94Show/hide
Query:  PEL-AQSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPH
        PE+  Q+ +   +  DG+W +DK++++F E+D+  +  IP   ++  D + W Y P G + VKS YR+G +  L     SSN E +  +WK LWS+ +P 
Subjt:  PEL-AQSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPH

Query:  RIKICSWKIIQSCLPMKDNLIRRGLEIN
        R+K+  W++  + LP K NL  RG+++N
Subjt:  RIKICSWKIIQSCLPMKDNLIRRGLEIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein2.0e-0925.98Show/hide
Query:  QSTVRSLLKEDGE---WDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRI
        + T+ +L +  G    WD  KI ++  + D G I +I        D+I+W YN  G +TV+S Y L          + +   G  +    +W++ I  ++
Subjt:  QSTVRSLLKEDGE---WDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRI

Query:  KICSWKIIQSCLPMKDNLIRRGLEINP
        K   W+ +   L   + L  RG+ I+P
Subjt:  KICSWKIIQSCLPMKDNLIRRGLEINP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCCGAACTGGCTCAAAGCACGGTTCGTAGTCTGTTAAAAGAAGACGGGGAGTGGGACGTTGATAAGATACGAAGGTATTTCCAGGAAGATGATGTTGGTAA
TATCCTCCAAATCCCACGTTACGGGATACATAATAATGACGAAATTGTTTGGAAGTATAATCCACGTGGTATCTTTACTGTCAAGAGTGTTTATCGCCTGGGCCTCCAAC
AACGACTAGCTCAGGAAGCCTCAAGTTCTAACAGTGAGGGTGTTAAGAACTTTTGGAAGTCATTATGGAGTATCCAGATCCCACACAGAATTAAAATTTGCTCATGGAAA
ATTATCCAGAGTTGCTTACCAATGAAAGACAACTTAATTCGTCGGGGTTTGGAAATCAACCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGATTCCCGAACTGGCTCAAAGCACGGTTCGTAGTCTGTTAAAAGAAGACGGGGAGTGGGACGTTGATAAGATACGAAGGTATTTCCAGGAAGATGATGTTGGTAA
TATCCTCCAAATCCCACGTTACGGGATACATAATAATGACGAAATTGTTTGGAAGTATAATCCACGTGGTATCTTTACTGTCAAGAGTGTTTATCGCCTGGGCCTCCAAC
AACGACTAGCTCAGGAAGCCTCAAGTTCTAACAGTGAGGGTGTTAAGAACTTTTGGAAGTCATTATGGAGTATCCAGATCCCACACAGAATTAAAATTTGCTCATGGAAA
ATTATCCAGAGTTGCTTACCAATGAAAGACAACTTAATTCGTCGGGGTTTGGAAATCAACCCATAG
Protein sequenceShow/hide protein sequence
MVIPELAQSTVRSLLKEDGEWDVDKIRRYFQEDDVGNILQIPRYGIHNNDEIVWKYNPRGIFTVKSVYRLGLQQRLAQEASSSNSEGVKNFWKSLWSIQIPHRIKICSWK
IIQSCLPMKDNLIRRGLEINP