; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0021951 (gene) of Snake gourd v1 genome

Gene IDTan0021951
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionSWIB domain-containing protein
Genome locationLG03:19170837..19175693
RNA-Seq ExpressionTan0021951
SyntenyTan0021951
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TKY46953.1 Upstream activation factor subunit spp27 [Spatholobus suberectus]1.4e-4493Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK NNLQDP NKNVV CDEKLKSIL+GKP VELAELPALIKLHFPK PK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK

XP_008449303.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo]3.1e-4491Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK NNLQDP NKNVV+CDEKLKSIL+GKP VELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK

XP_022928748.1 upstream activation factor subunit UAF30 [Cucurbita moschata]6.9e-4492Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIK NNLQDP NKNVVICDEKLKSIL+GK  +ELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK

XP_027343910.1 upstream activation factor subunit spp27 [Abrus precatorius]1.4e-4493Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK NNLQDP NKNVV CDEKLKSIL+GKP VELAELPALIKLHFPK PK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK

XP_038882021.1 upstream activation factor subunit spp27 [Benincasa hispida]1.9e-4695Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK
        MLP+RMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK NNLQDP NKNVVICDEKLKSIL+GKP VELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK

TrEMBL top hitse value%identityAlignment
A0A151SBL4 Upstream activation factor subunit UAF303.4e-4490Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDL+NLPSTLREFVGQSQISRLGCFKCVWSYIK NNLQDP NKNVV CDEKLKSIL+GKP V+LAELPALIK+HFPK PK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK

A0A1S3BL41 upstream activation factor subunit spp271.5e-4491Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIK NNLQDP NKNVV+CDEKLKSIL+GKP VELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK

A0A6J1ELR1 upstream activation factor subunit UAF303.4e-4492Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIK NNLQDP NKNVVICDEKLKSIL+GK  +ELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK

A0A6J1HWJ0 protein TRI1 isoform X15.7e-4492Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIK NNLQDP NKNVVICDEKL+SIL+GK  VELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK

A0A6J1HY33 upstream activation factor subunit UAF30 isoform X25.7e-4492Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIK NNLQDP NKNVVICDEKL+SIL+GK  VELAELPALIKLHFPKNPK
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp271.9e-0746.15Show/hide
Query:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSI
        + L   L EF+G  Q+SR    K +W YIK ++LQDP +K  ++CD+KLKS+
Subjt:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSI

Q05024 Protein TRI13.5e-0632.47Show/hide
Query:  RMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPM
        + K    D+P   +  +  V L + L++F+G  ++ R    K +W YIK ++LQ+P ++  ++CDEK++ I  GK M
Subjt:  RMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPM

Q08747 Upstream activation factor subunit UAF301.6e-0635.06Show/hide
Query:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK
        V L  +L   +G+ +++R    + +W+YIK +NLQ+P NK  ++CDEKL+ IL GK    + E+  ++  H  +  K
Subjt:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein2.3e-1344.93Show/hide
Query:  LREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKN
        L  F G+ +++R    K VW Y+K++NLQ+PANK  + CD+KLK+I  GK  V + E+  L+  HFPK+
Subjt:  LREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKN

AT2G35605.1 SWIB/MDM2 domain superfamily protein1.5e-1541.77Show/hide
Query:  LIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKN
        ++ +V +   L  F+G++++SR    K +W YIK+NNLQ+P NK  ++CDE+LK+I  GK  V   E+  L+  HFPK+
Subjt:  LIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKN

AT4G26810.1 SWIB/MDM2 domain superfamily protein6.3e-4384Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK
        MLPQR+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIK NNLQDP NKNVVICDEKLKSIL+GK  VEL +LP+LIKLHFPK  K
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK

AT4G26810.2 SWIB/MDM2 domain superfamily protein6.3e-4384Show/hide
Query:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK
        MLPQR+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIK NNLQDP NKNVVICDEKLKSIL+GK  VEL +LP+LIKLHFPK  K
Subjt:  MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK

AT4G34290.1 SWIB/MDM2 domain superfamily protein6.3e-1145.45Show/hide
Query:  LREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHF
        +++ VG  +I R    K +W+YIK ++LQDP NK  ++CDEKLK I  GK  V   E+  LI  HF
Subjt:  LREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCCACAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACCTCATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAATTTGTGGGACAGTC
CCAAATTTCTCGGTTAGGCTGCTTCAAGTGCGTATGGTCATATATCAAAATCAACAATCTTCAGGATCCGGCCAACAAAAATGTGGTAATTTGTGATGAGAAGTTAAAGA
GTATATTGGTAGGCAAGCCCATGGTTGAGCTAGCCGAACTTCCTGCACTGATTAAGTTACATTTTCCCAAAAACCCCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGCCACAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACCTCATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAATTTGTGGGACAGTC
CCAAATTTCTCGGTTAGGCTGCTTCAAGTGCGTATGGTCATATATCAAAATCAACAATCTTCAGGATCCGGCCAACAAAAATGTGGTAATTTGTGATGAGAAGTTAAAGA
GTATATTGGTAGGCAAGCCCATGGTTGAGCTAGCCGAACTTCCTGCACTGATTAAGTTACATTTTCCCAAAAACCCCAAGTGA
Protein sequenceShow/hide protein sequence
MLPQRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKINNLQDPANKNVVICDEKLKSILVGKPMVELAELPALIKLHFPKNPK