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Tan0022022 (gene) of Snake gourd v1 genome

Gene IDTan0022022
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionextensin-3-like
Genome locationLG11:9524050..9524981
RNA-Seq ExpressionTan0022022
SyntenyTan0022022
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058946.1 extensin-3-like [Cucumis melo var. makuwa]5.6e-1856.67Show/hide
Query:  MALVFSNLPSKFAAHYIPP---APP--PPATRPIVPYYPFIFPSK-KPYNKHT-SPLSPPQ---SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSA
        M L+ SNLPS FA HYIPP   +PP  PP T+PIVPY+PFI P   K  +KHT SP S PQ    RPIVPYYP+KF PPP  K  +PPP  H F P+   
Subjt:  MALVFSNLPSKFAAHYIPP---APP--PPATRPIVPYYPFIFPSK-KPYNKHT-SPLSPPQ---SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSA

Query:  LPAKKRYMSKSRWAASPPPP
          AKK +MS +R AA  PPP
Subjt:  LPAKKRYMSKSRWAASPPPP

KAA0058948.1 extensin-3-like [Cucumis melo var. makuwa]1.8e-2166.35Show/hide
Query:  PPATRPIVPYYPFIFPS--KKPYNKHT---SPLSPPQ--SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSALPAKKRYMSKSRWAASPPPPPKKPY
        P  TRPIVPY+PFIFP   KK + +HT    PL P Q   RPIVPYYP+KFPPPPS K+ NPP S HAF P    LPAKK YMS+ R AA PPPPPKKPY
Subjt:  PPATRPIVPYYPFIFPS--KKPYNKHT---SPLSPPQ--SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSALPAKKRYMSKSRWAASPPPPPKKPY

Query:  QWPK
        QWPK
Subjt:  QWPK

KAE8647164.1 hypothetical protein Csa_018816, partial [Cucumis sativus]2.4e-2157.89Show/hide
Query:  MALVFSNLPSKFAAHYIPP---APP--PPATRPIVPYYPFIFPSKKPYNK---HT--SPLSPPQ----SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHP
        M+L+  NLPS  A H IP    +PP  PP TRPIVP++PF FPS  P+ K   HT   P SPP      RPIVPY+P+KFPPPPS K+ NPPPS HAF P
Subjt:  MALVFSNLPSKFAAHYIPP---APP--PPATRPIVPYYPFIFPSKKPYNK---HT--SPLSPPQ----SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHP

Query:  QGSALPAKKRYMSKSRWAASPPPPPKKPYQWPK
            L A+K YMS+ R  A+PPPPP KPYQWPK
Subjt:  QGSALPAKKRYMSKSRWAASPPPPPKKPYQWPK

XP_008466986.1 PREDICTED: extensin-3-like, partial [Cucumis melo]9.8e-2359.06Show/hide
Query:  MGSHKSLFVFFL--LMALVFSNLPSKFAAHYIP-----PAPPPPATRPIVPYYPFIFPS--KKPYNKHT---SPLSPPQ--SRPIVPYYPFKFPPPPSSK
        M SH  +FVFFL  ++ L+  NLPS FAAHYIP     P P P  TRPIVPY+PFIFP   KK + +HT    PL P Q   RPIVPYYP+KFPPPPS K
Subjt:  MGSHKSLFVFFL--LMALVFSNLPSKFAAHYIP-----PAPPPPATRPIVPYYPFIFPS--KKPYNKHT---SPLSPPQ--SRPIVPYYPFKFPPPPSSK

Query:  RPNPPPSNHAFHPQGSALPAKKRYMSK
        + NPP S HAF P    LPAKK YMS+
Subjt:  RPNPPPSNHAFHPQGSALPAKKRYMSK

XP_022141653.1 extensin-3-like [Momordica charantia]1.7e-1957.35Show/hide
Query:  FVFFLLMALVFSNLPSKFAA-HYIPPAPP-----PPAT-RPIVPYYPFIF---PSKKPYNKHTSPLSPP--QSRPIVPYYPFKFPPPPSSKRPNPPPSNH
        FV F LMALV   LPSKFAA  YI P+PP     P +T RPIVPYYPFIF   P KKPY + + PL PP  Q RPIVPYYPF+FP         PPP  H
Subjt:  FVFFLLMALVFSNLPSKFAA-HYIPPAPP-----PPAT-RPIVPYYPFIF---PSKKPYNKHTSPLSPP--QSRPIVPYYPFKFPPPPSSKRPNPPPSNH

Query:  AFHPQGSALPAKKRYMSKSRWAASPPPPPKKPYQWP
        AF P  S  P++K Y    R+ +SPPPPPK+PYQWP
Subjt:  AFHPQGSALPAKKRYMSKSRWAASPPPPPKKPYQWP

TrEMBL top hitse value%identityAlignment
A0A0A0KD80 Uncharacterized protein1.9e-2757.86Show/hide
Query:  MGSHKSLFVFFL--LMALVFSNLPSKFAAHYIPP---APP--PPATRPIVPYYPFIFPSKKPYNK---HT--SPLSPPQ----SRPIVPYYPFKFPPPPS
        M S   +FVFFL  +M+L+  NLPS  A H IP    +PP  PP TRPIVP++PF FPS  P+ K   HT   P SPP      RPIVPY+P+KFPPPPS
Subjt:  MGSHKSLFVFFL--LMALVFSNLPSKFAAHYIPP---APP--PPATRPIVPYYPFIFPSKKPYNK---HT--SPLSPPQ----SRPIVPYYPFKFPPPPS

Query:  SKRPNPPPSNHAFHPQGSALPAKKRYMSKSRWAASPPPPPKKPYQWPKVISRKSPPPPF
         K+ NPPPS HAF P    L A+K YMS+ R  A+PPPPP KPYQWPK   RKSPPPPF
Subjt:  SKRPNPPPSNHAFHPQGSALPAKKRYMSKSRWAASPPPPPKKPYQWPKVISRKSPPPPF

A0A1S3CSG8 extensin-3-like4.7e-2359.06Show/hide
Query:  MGSHKSLFVFFL--LMALVFSNLPSKFAAHYIP-----PAPPPPATRPIVPYYPFIFPS--KKPYNKHT---SPLSPPQ--SRPIVPYYPFKFPPPPSSK
        M SH  +FVFFL  ++ L+  NLPS FAAHYIP     P P P  TRPIVPY+PFIFP   KK + +HT    PL P Q   RPIVPYYP+KFPPPPS K
Subjt:  MGSHKSLFVFFL--LMALVFSNLPSKFAAHYIP-----PAPPPPATRPIVPYYPFIFPS--KKPYNKHT---SPLSPPQ--SRPIVPYYPFKFPPPPSSK

Query:  RPNPPPSNHAFHPQGSALPAKKRYMSK
        + NPP S HAF P    LPAKK YMS+
Subjt:  RPNPPPSNHAFHPQGSALPAKKRYMSK

A0A5A7UXN4 Extensin-3-like2.7e-1856.67Show/hide
Query:  MALVFSNLPSKFAAHYIPP---APP--PPATRPIVPYYPFIFPSK-KPYNKHT-SPLSPPQ---SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSA
        M L+ SNLPS FA HYIPP   +PP  PP T+PIVPY+PFI P   K  +KHT SP S PQ    RPIVPYYP+KF PPP  K  +PPP  H F P+   
Subjt:  MALVFSNLPSKFAAHYIPP---APP--PPATRPIVPYYPFIFPSK-KPYNKHT-SPLSPPQ---SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSA

Query:  LPAKKRYMSKSRWAASPPPP
          AKK +MS +R AA  PPP
Subjt:  LPAKKRYMSKSRWAASPPPP

A0A5D3CVI1 Extensin-3-like8.9e-2266.35Show/hide
Query:  PPATRPIVPYYPFIFPS--KKPYNKHT---SPLSPPQ--SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSALPAKKRYMSKSRWAASPPPPPKKPY
        P  TRPIVPY+PFIFP   KK + +HT    PL P Q   RPIVPYYP+KFPPPPS K+ NPP S HAF P    LPAKK YMS+ R AA PPPPPKKPY
Subjt:  PPATRPIVPYYPFIFPS--KKPYNKHT---SPLSPPQ--SRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSALPAKKRYMSKSRWAASPPPPPKKPY

Query:  QWPK
        QWPK
Subjt:  QWPK

A0A6J1CL44 extensin-3-like8.4e-2057.35Show/hide
Query:  FVFFLLMALVFSNLPSKFAA-HYIPPAPP-----PPAT-RPIVPYYPFIF---PSKKPYNKHTSPLSPP--QSRPIVPYYPFKFPPPPSSKRPNPPPSNH
        FV F LMALV   LPSKFAA  YI P+PP     P +T RPIVPYYPFIF   P KKPY + + PL PP  Q RPIVPYYPF+FP         PPP  H
Subjt:  FVFFLLMALVFSNLPSKFAA-HYIPPAPP-----PPAT-RPIVPYYPFIF---PSKKPYNKHTSPLSPP--QSRPIVPYYPFKFPPPPSSKRPNPPPSNH

Query:  AFHPQGSALPAKKRYMSKSRWAASPPPPPKKPYQWP
        AF P  S  P++K Y    R+ +SPPPPPK+PYQWP
Subjt:  AFHPQGSALPAKKRYMSKSRWAASPPPPPKKPYQWP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATGGGGTCTCACAAATCCCTTTTTGTATTCTTCCTCCTCATGGCATTGGTCTTTTCAAACTTGCCCTCAAAATTTGCTGCACATTATATTCCCCCGGCACCACC
ACCTCCGGCTACCAGACCTATAGTTCCTTATTATCCTTTTATATTCCCATCTAAGAAGCCTTATAATAAACACACGTCTCCACTGTCGCCGCCGCAGTCAAGGCCAATAG
TTCCTTATTATCCATTTAAATTTCCACCACCTCCATCTTCAAAACGCCCCAATCCTCCTCCGAGCAACCATGCCTTTCACCCACAGGGCTCAGCACTGCCGGCCAAGAAG
CGTTACATGTCTAAGTCACGGTGGGCAGCCTCACCACCACCACCGCCTAAGAAGCCATATCAGTGGCCGAAGGTGATCAGCCGTAAATCGCCCCCACCTCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATTGTTAGACAAATGTTTTTCTATATATAATGTAGGTGTAAGATACCAAGGTTTGATGAAGCTTGAAAGAGATCTTAAAATCCATCTTCCTAGAATTGGAGAGAAAGAAT
GAGAATGGGGTCTCACAAATCCCTTTTTGTATTCTTCCTCCTCATGGCATTGGTCTTTTCAAACTTGCCCTCAAAATTTGCTGCACATTATATTCCCCCGGCACCACCAC
CTCCGGCTACCAGACCTATAGTTCCTTATTATCCTTTTATATTCCCATCTAAGAAGCCTTATAATAAACACACGTCTCCACTGTCGCCGCCGCAGTCAAGGCCAATAGTT
CCTTATTATCCATTTAAATTTCCACCACCTCCATCTTCAAAACGCCCCAATCCTCCTCCGAGCAACCATGCCTTTCACCCACAGGGCTCAGCACTGCCGGCCAAGAAGCG
TTACATGTCTAAGTCACGGTGGGCAGCCTCACCACCACCACCGCCTAAGAAGCCATATCAGTGGCCGAAGGTGATCAGCCGTAAATCGCCCCCACCTCCTTTCTAATACC
TACTACTATATATTTGCATCATATATATGGTGAAGAAGCTTTAGTTTTTTGTATTATATATTTTGGGATTTATTCGTGGTTGTTTTTTCATTCTCTGCATCAAGGAACAA
AGAGTGGATTGGAAGATTTCCTTGTTTATCTATGCATCTAGTTTTCATTCACCAAATCAAAACTAGATATGTATTTTTATCCTTTTTGGTCCATGGAGGGATGTGACTTA
TCGGGTGAAATCTCCCACTTCATAGCTCGATTGACATGAAGTAAGACTTATGATCTAGTGGTCATTAGTTCAAATCCCCCACCCCCAAATGTTGATGTATTCAAAAAAAT
AAAAATAAAGAGAGGAATATTTTAAATTTATATCTATTAGTTATAAGGGACA
Protein sequenceShow/hide protein sequence
MRMGSHKSLFVFFLLMALVFSNLPSKFAAHYIPPAPPPPATRPIVPYYPFIFPSKKPYNKHTSPLSPPQSRPIVPYYPFKFPPPPSSKRPNPPPSNHAFHPQGSALPAKK
RYMSKSRWAASPPPPPKKPYQWPKVISRKSPPPPF