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Tan0022029 (gene) of Snake gourd v1 genome

Gene IDTan0022029
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibulose-phosphate 3-epimerase
Genome locationLG11:56227584..56229126
RNA-Seq ExpressionTan0022029
SyntenyTan0022029
Gene Ontology termsGO:0009052 - pentose-phosphate shunt, non-oxidative branch (biological process)
GO:0019323 - pentose catabolic process (biological process)
GO:0044262 - cellular carbohydrate metabolic process (biological process)
GO:0005829 - cytosol (cellular component)
GO:0004750 - ribulose-phosphate 3-epimerase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000056 - Ribulose-phosphate 3-epimerase-like
IPR011060 - Ribulose-phosphate binding barrel
IPR013785 - Aldolase-type TIM barrel


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056588.1 ribulose-phosphate 3-epimerase [Cucumis melo var. makuwa]2.7e-4678.74Show/hide
Query:  MSRRAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPE
        M  RAYLDCHLMVTNPLDYVEPL K GASGFT HVEVSKDNWQQ I EIKSKGMKSGVALKPGTP+EEVYPLV   E+PVE+VLVMTVEPGFGGQKFMPE
Subjt:  MSRRAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPE

Query:  TMDKGRS--GKYKKLEVPVGFG-GPIT
        TMDK R+   KY  L++ V  G GP T
Subjt:  TMDKGRS--GKYKKLEVPVGFG-GPIT

KAG7015956.1 Ribulose-phosphate 3-epimerase, cytoplasmic isoform [Cucurbita argyrosperma subsp. argyrosperma]3.0e-4579.84Show/hide
Query:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD
        +AYLDCHLMVTNPLDYVEP  K GASGFT HVEVSKDNWQQ I EIKSKGMKSGVALKPGTPIEEVYPLV   E+PVEMVLVMTVEPGFGGQKFMPETMD
Subjt:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD

Query:  KGRS--GKYKKLEVPVGFG-GPIT
        K R    KY  L++ V  G GP T
Subjt:  KGRS--GKYKKLEVPVGFG-GPIT

XP_008441351.1 PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform [Cucumis melo]2.3e-4579.03Show/hide
Query:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD
        +AYLDCHLMVTNPLDYVEPL K GASGFT HVEVSKDNWQQ I EIKSKGMKSGVALKPGTP+EEVYPLV   E+PVE+VLVMTVEPGFGGQKFMPETMD
Subjt:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD

Query:  KGRS--GKYKKLEVPVGFG-GPIT
        K R+   KY  L++ V  G GP T
Subjt:  KGRS--GKYKKLEVPVGFG-GPIT

XP_022939918.1 ribulose-phosphate 3-epimerase, cytoplasmic isoform [Cucurbita moschata]1.0e-4580.65Show/hide
Query:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD
        +AYLDCHLMVTNPLDYVEPL K GASGFT HVEVSKDNWQQ I EIKSKGMKSGVALKPGTPIEEVYPLV   E+PVEMVLVMTVEPGFGGQKFMPETMD
Subjt:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD

Query:  KGRS--GKYKKLEVPVGFG-GPIT
        K R    KY  L++ V  G GP T
Subjt:  KGRS--GKYKKLEVPVGFG-GPIT

XP_038884765.1 ribulose-phosphate 3-epimerase, cytoplasmic isoform isoform X1 [Benincasa hispida]2.7e-4679.84Show/hide
Query:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD
        +AYLDCHLMVTNPLDY+EPL K GASGFT HVEVSKDNWQQ IHEIKSKGMKSGVALKPGTPIEEVYPLV   E+PVEMVLVMTVEPGFGGQKFMPETMD
Subjt:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD

Query:  KGRS--GKYKKLEVPVGFG-GPIT
        K R+   +Y  L++ V  G GP T
Subjt:  KGRS--GKYKKLEVPVGFG-GPIT

TrEMBL top hitse value%identityAlignment
A0A0A0LMZ3 Ribulose-phosphate 3-epimerase1.9e-4579.03Show/hide
Query:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD
        +AYLDCHLMVTNPLDYVEPL K GASGFT HVEVSKDNWQQ I EIKSKGMKSGVALKPGTPIEEVYPLV   E+PV++VLVMTVEPGFGGQKFMPETMD
Subjt:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD

Query:  KGRS--GKYKKLEVPVGFG-GPIT
        K R+   KY  L++ V  G GP T
Subjt:  KGRS--GKYKKLEVPVGFG-GPIT

A0A1S3B391 Ribulose-phosphate 3-epimerase1.1e-4579.03Show/hide
Query:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD
        +AYLDCHLMVTNPLDYVEPL K GASGFT HVEVSKDNWQQ I EIKSKGMKSGVALKPGTP+EEVYPLV   E+PVE+VLVMTVEPGFGGQKFMPETMD
Subjt:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD

Query:  KGRS--GKYKKLEVPVGFG-GPIT
        K R+   KY  L++ V  G GP T
Subjt:  KGRS--GKYKKLEVPVGFG-GPIT

A0A5D3DLX4 Ribulose-phosphate 3-epimerase1.3e-4678.74Show/hide
Query:  MSRRAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPE
        M  RAYLDCHLMVTNPLDYVEPL K GASGFT HVEVSKDNWQQ I EIKSKGMKSGVALKPGTP+EEVYPLV   E+PVE+VLVMTVEPGFGGQKFMPE
Subjt:  MSRRAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPE

Query:  TMDKGRS--GKYKKLEVPVGFG-GPIT
        TMDK R+   KY  L++ V  G GP T
Subjt:  TMDKGRS--GKYKKLEVPVGFG-GPIT

A0A6J1FMW0 Ribulose-phosphate 3-epimerase4.9e-4680.65Show/hide
Query:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD
        +AYLDCHLMVTNPLDYVEPL K GASGFT HVEVSKDNWQQ I EIKSKGMKSGVALKPGTPIEEVYPLV   E+PVEMVLVMTVEPGFGGQKFMPETMD
Subjt:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD

Query:  KGRS--GKYKKLEVPVGFG-GPIT
        K R    KY  L++ V  G GP T
Subjt:  KGRS--GKYKKLEVPVGFG-GPIT

A0A6J1JY19 Ribulose-phosphate 3-epimerase1.4e-4579.84Show/hide
Query:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD
        +AYLDCHLMVTNPLDYVEP  K GASGFT HVEVSKDNWQQ I EIKSKGMKSGVALKPGTPIEEVYPLV   E+PVEMVLVMTVEPGFGGQKFMPETMD
Subjt:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD

Query:  KGRS--GKYKKLEVPVGFG-GPIT
        K R    KY  L++ V  G GP T
Subjt:  KGRS--GKYKKLEVPVGFG-GPIT

SwissProt top hitse value%identityAlignment
O14105 Ribulose-phosphate 3-epimerase2.4e-1845.76Show/hide
Query:  AYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK
        A+ DCHLMV  P  Y++ L   GAS F  H E ++ + ++ I     KGM  G ALKP TP+E + P V      ++MVLVMTVEPG GGQ FMPE + K
Subjt:  AYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK

Query:  GR--SGKYKKLEVPVGFG
              KY  L V V  G
Subjt:  GR--SGKYKKLEVPVGFG

P46969 Ribulose-phosphate 3-epimerase4.9e-1943.22Show/hide
Query:  AYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK
        A+ DCH+MV NP  +V+   K GA  FT H E ++D     +  IKSKG+K+  A+KPGT ++ ++ L  +    ++M LVMTVEPGFGGQKFM + M K
Subjt:  AYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK

Query:  GRS--GKYKKLEVPVGFG
          +   K+  L + V  G
Subjt:  GRS--GKYKKLEVPVGFG

Q6FL81 Ribulose-phosphate 3-epimerase1.4e-1841.6Show/hide
Query:  AYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK
        A+ DCH+MV  P  +V    K GA  FT H E +KD     +  IK  G+K+  A+KPGTP++ ++ L       ++M LVMTVEPGFGGQKFMP+ M K
Subjt:  AYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK

Query:  GRSGKYK----KLEVPVGFGGPITG
          + + K     ++V  G G    G
Subjt:  GRSGKYK----KLEVPVGFGGPITG

Q755M2 Ribulose-phosphate 3-epimerase3.2e-1841.18Show/hide
Query:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD
        +A+ DCH+MV  P  +V+   + GA  FT H E +K N  + +  IKS+G+++  A+KP TP++ ++ L       ++M LVMTVEPGFGGQKFMP+ M 
Subjt:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD

Query:  K--GRSGKYKKLEVPVGFG
        K      K+ +L++ V  G
Subjt:  K--GRSGKYKKLEVPVGFG

Q9SE42 Ribulose-phosphate 3-epimerase, cytoplasmic isoform1.4e-4268.55Show/hide
Query:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD
        +AYLDCHLMVTNP DYVEPL K GASGFT H+EVS+DNWQ+ I  IK+KGM+ GV+L+PGTP+EEV+PLV   E+PVE+VLVMTVEPGFGGQKFMPE M+
Subjt:  RAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMD

Query:  KGRS--GKYKKLEVPVGFG-GPIT
        K R+   KY  L++ V  G GP T
Subjt:  KGRS--GKYKKLEVPVGFG-GPIT

Arabidopsis top hitse value%identityAlignment
AT1G63290.1 Aldolase-type TIM barrel family protein3.6e-4165.85Show/hide
Query:  AYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK
        AYLDCHLMVTNP+DYV+ + K GASGFT HVEV+++NWQ+ + +IK+ GM+ GVALKPGTP+E+VYPLV    +PVEMVLVMTVEPGFGGQKFMP  MDK
Subjt:  AYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK

Query:  GRS--GKYKKLEVPVGFG-GPIT
         R+   KY  L++ V  G GP T
Subjt:  GRS--GKYKKLEVPVGFG-GPIT

AT3G01850.1 Aldolase-type TIM barrel family protein9.5e-4268.29Show/hide
Query:  AYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK
        AYLDCHLMVTNP+DYV  + K GASGFT HVEV++DNWQQ + +IKS GM+ GVALKPGTP+E+VYPLV     PVEMVLVMTVEPGFGGQKFMP+ MDK
Subjt:  AYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK

Query:  GRS--GKYKKLEVPVGFG-GPIT
         R+   KY  L++ V  G GP T
Subjt:  GRS--GKYKKLEVPVGFG-GPIT

AT3G01850.2 Aldolase-type TIM barrel family protein9.5e-4268.29Show/hide
Query:  AYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK
        AYLDCHLMVTNP+DYV  + K GASGFT HVEV++DNWQQ + +IKS GM+ GVALKPGTP+E+VYPLV     PVEMVLVMTVEPGFGGQKFMP+ MDK
Subjt:  AYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK

Query:  GRS--GKYKKLEVPVGFG-GPIT
         R+   KY  L++ V  G GP T
Subjt:  GRS--GKYKKLEVPVGFG-GPIT

AT5G61410.1 D-ribulose-5-phosphate-3-epimerase6.0e-1238.38Show/hide
Query:  LDCHLMVTNPLDYVEPLEKVGASGFTSHVE-VSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK
        LD HLM+  P   V    K GA   + H E  S  +  + +++IKS G K+GV L PGTP+  +  ++      V++VL+M+V PGFGGQ F+   + K
Subjt:  LDCHLMVTNPLDYVEPLEKVGASGFTSHVE-VSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK

AT5G61410.2 D-ribulose-5-phosphate-3-epimerase6.0e-1238.38Show/hide
Query:  LDCHLMVTNPLDYVEPLEKVGASGFTSHVE-VSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK
        LD HLM+  P   V    K GA   + H E  S  +  + +++IKS G K+GV L PGTP+  +  ++      V++VL+M+V PGFGGQ F+   + K
Subjt:  LDCHLMVTNPLDYVEPLEKVGASGFTSHVE-VSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCGCCGGGCATATCTTGATTGCCACCTTATGGTTACAAATCCCCTTGATTACGTTGAACCCTTGGAAAAAGTTGGTGCTTCAGGCTTTACATCTCATGTTGAAGT
ATCCAAAGACAATTGGCAGCAATTTATCCATGAAATTAAGTCAAAGGGCATGAAGTCAGGGGTAGCGCTAAAACCTGGAACACCCATTGAAGAAGTTTATCCTCTGGTAT
GCAATTATGAACATCCTGTGGAAATGGTCCTTGTTATGACAGTAGAACCTGGTTTTGGTGGCCAAAAGTTCATGCCAGAAACGATGGATAAGGGACGATCGGGTAAGTAT
AAGAAACTTGAAGTTCCGGTTGGTTTCGGTGGTCCAATAACCGGAAGAAGATTAACTCCTGGGAAGATGCGAGAGAAAGAATTCTTACCAGGTATCGTCCGACGCAAGAA
AGTAATCTATGTGCCCGATTTTTGTCCATCAAGCAGGAAGGAACAGTTGGTGAATATCGCAAGAAATTTGAATCGTATTCGGGACCCTTACCCGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCGCCGGGCATATCTTGATTGCCACCTTATGGTTACAAATCCCCTTGATTACGTTGAACCCTTGGAAAAAGTTGGTGCTTCAGGCTTTACATCTCATGTTGAAGT
ATCCAAAGACAATTGGCAGCAATTTATCCATGAAATTAAGTCAAAGGGCATGAAGTCAGGGGTAGCGCTAAAACCTGGAACACCCATTGAAGAAGTTTATCCTCTGGTAT
GCAATTATGAACATCCTGTGGAAATGGTCCTTGTTATGACAGTAGAACCTGGTTTTGGTGGCCAAAAGTTCATGCCAGAAACGATGGATAAGGGACGATCGGGTAAGTAT
AAGAAACTTGAAGTTCCGGTTGGTTTCGGTGGTCCAATAACCGGAAGAAGATTAACTCCTGGGAAGATGCGAGAGAAAGAATTCTTACCAGGTATCGTCCGACGCAAGAA
AGTAATCTATGTGCCCGATTTTTGTCCATCAAGCAGGAAGGAACAGTTGGTGAATATCGCAAGAAATTTGAATCGTATTCGGGACCCTTACCCGGTTTAG
Protein sequenceShow/hide protein sequence
MSRRAYLDCHLMVTNPLDYVEPLEKVGASGFTSHVEVSKDNWQQFIHEIKSKGMKSGVALKPGTPIEEVYPLVCNYEHPVEMVLVMTVEPGFGGQKFMPETMDKGRSGKY
KKLEVPVGFGGPITGRRLTPGKMREKEFLPGIVRRKKVIYVPDFCPSSRKEQLVNIARNLNRIRDPYPV