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Tan0022107 (gene) of Snake gourd v1 genome

Gene IDTan0022107
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein RADIALIS-like 3
Genome locationLG01:115023143..115024438
RNA-Seq ExpressionTan0022107
SyntenyTan0022107
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147867.1 protein RADIALIS-like 3 [Cucumis sativus]4.0e-4188.3Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYE+LVEDVNKIETGQVPFPNYR+S PA RGF F+D+EQRMR+L+L+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH

XP_008465612.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]8.0e-4294.25Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYE+LVEDVNKIETGQVPFPNYR+SGPA RGFCF+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQR

XP_022138113.1 protein RADIALIS-like 3 [Momordica charantia]1.8e-4187.37Show/hide
Query:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH
        MGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKTAEEVKRHYE+LV+DVNKIETGQVPFPNYRKS    RGFCF+DEE+RMR+LRLH
Subjt:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH

XP_022941099.1 protein RADIALIS-like 3 [Cucurbita moschata]1.1e-3885.11Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH
        M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y KS PAG GF FVDEEQRMR+L+LH
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH

XP_038905673.1 protein RADIALIS-like 3 [Benincasa hispida]2.0e-4594.68Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH
        MGSGS+WTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYE+LVEDVNKIETGQVPFPNYR+SGPA RGFCFVDEEQRMR+LRLH
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH

TrEMBL top hitse value%identityAlignment
A0A0A0LGK8 SANT domain-containing protein1.9e-4188.3Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH
        MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYE+LVEDVNKIETGQVPFPNYR+S PA RGF F+D+EQRMR+L+L+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH

A0A1S3CPA0 protein RADIALIS-like 33.9e-4294.25Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYE+LVEDVNKIETGQVPFPNYR+SGPA RGFCF+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQR

A0A5D3D7Z0 Protein RADIALIS-like 33.9e-4294.25Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQR
        MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYE+LVEDVNKIETGQVPFPNYR+SGPA RGFCF+D+EQR
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQR

A0A6J1CC55 protein RADIALIS-like 38.6e-4287.37Show/hide
Query:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH
        MGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKTAEEVKRHYE+LV+DVNKIETGQVPFPNYRKS    RGFCF+DEE+RMR+LRLH
Subjt:  MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH

A0A6J1FM85 protein RADIALIS-like 35.2e-3985.11Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH
        M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y KS PAG GF FVDEEQRMR+L+LH
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.1e-2864.84Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRL
        S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G     EE+RMR +RL
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRL

Q1A173 Protein RADIALIS-like 64.6e-2458.43Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRL
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+      R     D  ++M+ L++
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRL

Q58FS3 Transcription factor RADIALIS3.2e-2558.7Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRL
        GSG  W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+G+VPFPNYR +G   +      +E+R R L++
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRL

Q6NNN0 Protein RADIALIS-like 35.4e-2567.12Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSG
        M S ++WT K+NK+FE ALA YD+DTP+RWHN+ARAVGGK+AEEV+RHYE L+ DVN IE+G+ P PNYR +G
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSG

Q9SIJ5 Protein RADIALIS-like 22.2e-2662.37Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR-KSGPAGRGFCFVDEEQRMRTLRL
        GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+  +G + RG    DEE+RMR+++L
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR-KSGPAGRGFCFVDEEQRMRTLRL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.8e-2365.71Show/hide
Query:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR
        M S S+WT+KQNK+FE ALA+YDKDTP+RW N+A+AVG K+AEEVKRHY+ LVED+  IE   VP P Y+
Subjt:  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR

AT1G75250.1 RAD-like 61.2e-2472.73Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR

AT1G75250.2 RAD-like 63.2e-2558.43Show/hide
Query:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRL
        S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+      R     D  ++M+ L++
Subjt:  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRL

AT2G21650.1 Homeodomain-like superfamily protein1.6e-2762.37Show/hide
Query:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR-KSGPAGRGFCFVDEEQRMRTLRL
        GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+  +G + RG    DEE+RMR+++L
Subjt:  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR-KSGPAGRGFCFVDEEQRMRTLRL

AT4G39250.1 RAD-like 12.2e-2964.84Show/hide
Query:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRL
        S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G     EE+RMR +RL
Subjt:  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTCTGGATCGAATTGGACGGCGAAGCAGAACAAAGTCTTCGAAAATGCTTTAGCGATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGT
CGGCGGGAAGACGGCGGAGGAAGTGAAACGGCACTACGAAAAGCTCGTTGAAGATGTCAACAAGATCGAAACCGGCCAAGTTCCTTTCCCCAATTACAGAAAATCCGGAC
CCGCAGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGATGAGGACTCTACGATTGCACTGA
mRNA sequenceShow/hide mRNA sequence
GCAACAGCTAAAAGGCAAATAACGTTGAACCCACTTGCCCCATATTCCCTCTCTGTTTCAGTAGTATTTAAACATCAGAAATTGCAGCCAATTCTGCCATAAAAAACCAA
TTACTGATCTGAAATTGATAGTCTCTGACTCTCTGATACGAACGCAGTTGAAATTACGATGGGCTCTGGATCGAATTGGACGGCGAAGCAGAACAAAGTCTTCGAAAATG
CTTTAGCGATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAACGGCACTACGAAAAGCTCGTTGAA
GATGTCAACAAGATCGAAACCGGCCAAGTTCCTTTCCCCAATTACAGAAAATCCGGACCCGCAGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGATGAGGACTCT
ACGATTGCACTGAAGCATGAATGTGGAGGAGAGAGAGTTCTATCTCTCCATTAACTTTTTCAACTAAAACTTGCAATGTTCAACCACCAAATTTTAATGAAATGTGAAGG
CTAAATGTAGCTAGTTTTCTTCAGCCATCTTTATTGTAATTTCTACTTTTTTTTTTTTCTTAATCTTCTATCATCAAAGTGTCATGTCAAAATTGTTTTATATTGAATAA
ATATTCGTGTCGATAAGACTTATTATTGTACTTATATAATTAATTATCAAGTTTGCCAC
Protein sequenceShow/hide protein sequence
MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRTLRLH