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Tan0022196 (gene) of Snake gourd v1 genome

Gene IDTan0022196
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionF-box protein interaction domain protein
Genome locationLG11:15584208..15585007
RNA-Seq ExpressionTan0022196
SyntenyTan0022196
Gene Ontology termsGO:0050896 - response to stimulus (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AES77778.2 F-box protein interaction domain protein [Medicago truncatula]2.2e-0644.71Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESSGCWECGQSRHMKRNCPNRASSSKGFGSDANVVSLIRGDCD
        +NFSLW+VQVKDV IQSGLHK                            CG SRH KRNCP  A   K   S A+ VSL+ GD D
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESSGCWECGQSRHMKRNCPNRASSSKGFGSDANVVSLIRGDCD

AES77780.2 F-box protein interaction domain protein [Medicago truncatula]3.8e-0644.58Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESSGCWECGQSRHMKRNCPNRASSSKGFGSDANVVSLIRGD
        +NFSLW+VQVKDV IQSGLHK                            CG SRH KRNCP  A   K   S A+ VSL+ GD
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESSGCWECGQSRHMKRNCPNRASSSKGFGSDANVVSLIRGD

KAF6150548.1 hypothetical protein GIB67_030349 [Kingdonia uniflora]2.6e-0741.94Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKG--IPSYGISEKLSGDGGSTESS-------GCWECGQSRHMKRNC----PNRASSSKGFGSDANVVSLI
        +NF LWQ+ V+D+LIQ GL KALKG  IP   +  K S    S + S        CW CGQS H + +C     NRASS++G  +D N ++ +
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKG--IPSYGISEKLSGDGGSTESS-------GCWECGQSRHMKRNC----PNRASSSKGFGSDANVVSLI

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]5.7e-1069.49Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESSGCWECGQSRHMKRN
        +NF LWQVQVKDVLIQS LHKALKG PS G SEKLS DGG  ESSG    G SR  K++
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESSGCWECGQSRHMKRN

XP_022154929.1 uncharacterized protein LOC111022075 [Momordica charantia]9.7e-1080Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESS
        +NF LWQVQVKDV+IQSGLHKALKG PS   SEKLSGDGG  ESS
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESS

TrEMBL top hitse value%identityAlignment
A0A6J1CG82 uncharacterized protein LOC1110105212.8e-1069.49Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESSGCWECGQSRHMKRN
        +NF LWQVQVKDVLIQS LHKALKG PS G SEKLS DGG  ESSG    G SR  K++
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESSGCWECGQSRHMKRN

A0A6J1DNQ5 uncharacterized protein LOC1110220754.7e-1080Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESS
        +NF LWQVQVKDV+IQSGLHKALKG PS   SEKLSGDGG  ESS
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESS

A0A7J7M716 Uncharacterized protein1.3e-0741.94Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKG--IPSYGISEKLSGDGGSTESS-------GCWECGQSRHMKRNC----PNRASSSKGFGSDANVVSLI
        +NF LWQ+ V+D+LIQ GL KALKG  IP   +  K S    S + S        CW CGQS H + +C     NRASS++G  +D N ++ +
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKG--IPSYGISEKLSGDGGSTESS-------GCWECGQSRHMKRNC----PNRASSSKGFGSDANVVSLI

G7KRX4 F-box protein interaction domain protein1.1e-0644.71Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESSGCWECGQSRHMKRNCPNRASSSKGFGSDANVVSLIRGDCD
        +NFSLW+VQVKDV IQSGLHK                            CG SRH KRNCP  A   K   S A+ VSL+ GD D
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESSGCWECGQSRHMKRNCPNRASSSKGFGSDANVVSLIRGDCD

G7KRX6 F-box protein interaction domain protein1.9e-0644.58Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESSGCWECGQSRHMKRNCPNRASSSKGFGSDANVVSLIRGD
        +NFSLW+VQVKDV IQSGLHK                            CG SRH KRNCP  A   K   S A+ VSL+ GD
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESSGCWECGQSRHMKRNCPNRASSSKGFGSDANVVSLIRGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTTAGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGGTTACACAAGGCTTTGAAGGGAATACCGAGTTATGGTATTTCTGAAAAGTTAAGCGG
TGATGGTGGTTCAACAGAGTCTAGTGGTTGCTGGGAATGCGGGCAGTCAAGACACATGAAAAGGAATTGTCCTAACAGAGCAAGTTCTTCAAAAGGCTTTGGGTCAGATG
CTAACGTGGTCTCTCTCATCAGGGGAGATTGCGACTTCTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTTAGCTTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGGTTACACAAGGCTTTGAAGGGAATACCGAGTTATGGTATTTCTGAAAAGTTAAGCGG
TGATGGTGGTTCAACAGAGTCTAGTGGTTGCTGGGAATGCGGGCAGTCAAGACACATGAAAAGGAATTGTCCTAACAGAGCAAGTTCTTCAAAAGGCTTTGGGTCAGATG
CTAACGTGGTCTCTCTCATCAGGGGAGATTGCGACTTCTTCTGA
Protein sequenceShow/hide protein sequence
MNFSLWQVQVKDVLIQSGLHKALKGIPSYGISEKLSGDGGSTESSGCWECGQSRHMKRNCPNRASSSKGFGSDANVVSLIRGDCDFF