; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0022222 (gene) of Snake gourd v1 genome

Gene IDTan0022222
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG09:9608229..9609086
RNA-Seq ExpressionTan0022222
SyntenyTan0022222
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-2835.13Show/hide
Query:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA
        + A+R+VR+ Y+RW +ANEKA+ YI+A++S+VL KKHE M+TA+ IM+ LQE        I+H D+LKY++NARM EG+SVREHVL+MM HFN+AEMNGA
Subjt:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA

Query:  SIDESSQ--------------------------------------------------------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRL
         IDE+SQ                                                              GST GTK +  S  N K + K+G   ++  L
Subjt:  SIDESSQ--------------------------------------------------------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRL

Query:  WRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--------------------------NQGATNHVCSSFRGL
          A+ +KK +  + +  F   +    +   PK+LAE+K                          + GATNHVCSSF+G+
Subjt:  WRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--------------------------NQGATNHVCSSFRGL

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-2835.13Show/hide
Query:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA
        + A+R+VR+ Y+RW +ANEKA+ YI+A++S+VL KKHE M+TA+ IM+ LQE        I+H D+LKY++NARM EG+SVREHVL+MM HFN+AEMNGA
Subjt:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA

Query:  SIDESSQ--------------------------------------------------------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRL
         IDE+SQ                                                              GST GTK +  S  N K + K+G   ++  L
Subjt:  SIDESSQ--------------------------------------------------------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRL

Query:  WRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--------------------------NQGATNHVCSSFRGL
          A+ +KK +  + +  F   +    +   PK+LAE+K                          + GATNHVCSSF+G+
Subjt:  WRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--------------------------NQGATNHVCSSFRGL

KAA0060254.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-2843.28Show/hide
Query:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA
        + A+++VR+ Y+RW + NEK + YI+A++S+VL KKHE M+TA+ IM+ LQE        I H D+LKY++NARM EG+SVREHVL+MM HFN+AEMNGA
Subjt:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA

Query:  SIDESSQ-----------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRLWRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--NQGAT
         IDE+SQ                 GST GTK +  S  N K + K+G   ++  L  A+ +KK +  + +  F   +    +   PK+LAE+K   QG  
Subjt:  SIDESSQ-----------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRLWRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--NQGAT

Query:  N
        N
Subjt:  N

TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-2843.28Show/hide
Query:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA
        + A+++VR+ Y+RW + NEK + YI+A++S+VL KKHE M+TA+ IM+ LQE        I H D+LKY++NARM EG+SVREHVL+MM HFN+AEMNGA
Subjt:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA

Query:  SIDESSQ-----------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRLWRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--NQGAT
         IDE+SQ                 GST GTK +  S  N K + K+G   ++  L  A+ +KK +  + +  F   +    +   PK+LAE+K   QG  
Subjt:  SIDESSQ-----------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRLWRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--NQGAT

Query:  N
        N
Subjt:  N

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-2835.13Show/hide
Query:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA
        + A+R+VR+ Y+RW +ANEKA+ YI+A++S+VL KKHE M+TA+ IM+ LQE        I+H D+LKY++NARM EG+SVREHVL+MM HFN+AEMNGA
Subjt:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA

Query:  SIDESSQ--------------------------------------------------------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRL
         IDE+SQ                                                              GST GTK +  S  N K + K+G   ++  L
Subjt:  SIDESSQ--------------------------------------------------------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRL

Query:  WRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--------------------------NQGATNHVCSSFRGL
          A+ +KK +  + +  F   +    +   PK+LAE+K                          + GATNHVCSSF+G+
Subjt:  WRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--------------------------NQGATNHVCSSFRGL

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein3.0e-2835.13Show/hide
Query:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA
        + A+R+VR+ Y+RW +ANEKA+ YI+A++S+VL KKHE M+TA+ IM+ LQE        I+H D+LKY++NARM EG+SVREHVL+MM HFN+AEMNGA
Subjt:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA

Query:  SIDESSQ--------------------------------------------------------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRL
         IDE+SQ                                                              GST GTK +  S  N K + K+G   ++  L
Subjt:  SIDESSQ--------------------------------------------------------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRL

Query:  WRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--------------------------NQGATNHVCSSFRGL
          A+ +KK +  + +  F   +    +   PK+LAE+K                          + GATNHVCSSF+G+
Subjt:  WRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--------------------------NQGATNHVCSSFRGL

A0A5A7UYX7 Gag/pol protein1.7e-2843.28Show/hide
Query:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA
        + A+++VR+ Y+RW + NEK + YI+A++S+VL KKHE M+TA+ IM+ LQE        I H D+LKY++NARM EG+SVREHVL+MM HFN+AEMNGA
Subjt:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA

Query:  SIDESSQ-----------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRLWRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--NQGAT
         IDE+SQ                 GST GTK +  S  N K + K+G   ++  L  A+ +KK +  + +  F   +    +   PK+LAE+K   QG  
Subjt:  SIDESSQ-----------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRLWRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--NQGAT

Query:  N
        N
Subjt:  N

A0A5A7V4M1 Gag/pol protein3.0e-2835.13Show/hide
Query:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA
        + A+R+VR+ Y+RW +ANEKA+ YI+A++S+VL KKHE M+TA+ IM+ LQE        I+H D+LKY++NARM EG+SVREHVL+MM HFN+AEMNGA
Subjt:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA

Query:  SIDESSQ--------------------------------------------------------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRL
         IDE+SQ                                                              GST GTK +  S  N K + K+G   ++  L
Subjt:  SIDESSQ--------------------------------------------------------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRL

Query:  WRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--------------------------NQGATNHVCSSFRGL
          A+ +KK +  + +  F   +    +   PK+LAE+K                          + GATNHVCSSF+G+
Subjt:  WRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--------------------------NQGATNHVCSSFRGL

A0A5D3BHG7 Gag/pol protein1.7e-2843.28Show/hide
Query:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA
        + A+++VR+ Y+RW + NEK + YI+A++S+VL KKHE M+TA+ IM+ LQE        I H D+LKY++NARM EG+SVREHVL+MM HFN+AEMNGA
Subjt:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA

Query:  SIDESSQ-----------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRLWRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--NQGAT
         IDE+SQ                 GST GTK +  S  N K + K+G   ++  L  A+ +KK +  + +  F   +    +   PK+LAE+K   QG  
Subjt:  SIDESSQ-----------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRLWRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--NQGAT

Query:  N
        N
Subjt:  N

A0A5D3CPJ6 Gag/pol protein3.0e-2835.13Show/hide
Query:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA
        + A+R+VR+ Y+RW +ANEKA+ YI+A++S+VL KKHE M+TA+ IM+ LQE        I+H D+LKY++NARM EG+SVREHVL+MM HFN+AEMNGA
Subjt:  STASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQE--------IRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGA

Query:  SIDESSQ--------------------------------------------------------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRL
         IDE+SQ                                                              GST GTK +  S  N K + K+G   ++  L
Subjt:  SIDESSQ--------------------------------------------------------------GSTCGTKPVALSRPNGKKRMKRGKTNSELRL

Query:  WRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--------------------------NQGATNHVCSSFRGL
          A+ +KK +  + +  F   +    +   PK+LAE+K                          + GATNHVCSSF+G+
Subjt:  WRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERK--------------------------NQGATNHVCSSFRGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGCTCGACTGCATCGCGAAGTGTTCGTGATGCATACGATCGATGGATCAGGGCCAATGAAAAGGCCAAGGTCTATATCATTGCCAACATGTCTGATGTTTTGGA
AAAGAAACATGAGCTAATGGTCACCGCTAAGGTGATCATGGAGTTCTTACAGGAAATTCGGCATGATGACTCGCTCAAATACGTCTTCAACGCACGAATGAAAGAGGGGT
CATCTGTCCGTGAACATGTTCTAGACATGATGACCCACTTTAATCTAGCTGAGATGAACGGGGCTTCGATCGACGAGTCGAGCCAGGGTTCGACCTGTGGGACTAAACCT
GTTGCTCTTTCACGTCCGAATGGGAAGAAGAGGATGAAGAGGGGTAAAACTAACTCAGAATTGCGCCTGTGGAGGGCAAGAAGGTCAAAGAAGTTGCGAGAAAAGGAAAG
TGTTTCCACCTTTGCAATGGGGCGAACATCTTTGGAAGAGGAAGCATCCCCCAAATTCCTAGCCGAGAGGAAGAATCAAGGCGCCACTAACCATGTTTGTTCTTCTTTTC
GAGGATTGATTCTGGCAAAGAAGTGCGAGAGGGTGAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGGCTCGACTGCATCGCGAAGTGTTCGTGATGCATACGATCGATGGATCAGGGCCAATGAAAAGGCCAAGGTCTATATCATTGCCAACATGTCTGATGTTTTGGA
AAAGAAACATGAGCTAATGGTCACCGCTAAGGTGATCATGGAGTTCTTACAGGAAATTCGGCATGATGACTCGCTCAAATACGTCTTCAACGCACGAATGAAAGAGGGGT
CATCTGTCCGTGAACATGTTCTAGACATGATGACCCACTTTAATCTAGCTGAGATGAACGGGGCTTCGATCGACGAGTCGAGCCAGGGTTCGACCTGTGGGACTAAACCT
GTTGCTCTTTCACGTCCGAATGGGAAGAAGAGGATGAAGAGGGGTAAAACTAACTCAGAATTGCGCCTGTGGAGGGCAAGAAGGTCAAAGAAGTTGCGAGAAAAGGAAAG
TGTTTCCACCTTTGCAATGGGGCGAACATCTTTGGAAGAGGAAGCATCCCCCAAATTCCTAGCCGAGAGGAAGAATCAAGGCGCCACTAACCATGTTTGTTCTTCTTTTC
GAGGATTGATTCTGGCAAAGAAGTGCGAGAGGGTGAGGTGA
Protein sequenceShow/hide protein sequence
MSGSTASRSVRDAYDRWIRANEKAKVYIIANMSDVLEKKHELMVTAKVIMEFLQEIRHDDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGASIDESSQGSTCGTKP
VALSRPNGKKRMKRGKTNSELRLWRARRSKKLREKESVSTFAMGRTSLEEEASPKFLAERKNQGATNHVCSSFRGLILAKKCERVR