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Tan0022227 (gene) of Snake gourd v1 genome

Gene IDTan0022227
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposable element Tf2
Genome locationLG04:22772595..22774679
RNA-Seq ExpressionTan0022227
SyntenyTan0022227
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025901.1 hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]2.8e-1746.34Show/hide
Query:  PMRPSVSPTTPSSSQQGS---SIPTTFYNFSHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEV
        P   S S  +P S+ Q +      T  Y+F HA IK +K+WF +NGYLQD+ + KNV+FLN KS LLA LAQ TT+AD Q++L    + ++SS   +S +
Subjt:  PMRPSVSPTTPSSSQQGS---SIPTTFYNFSHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEV

Query:  EEDD-----EYDINDPFLDSQPI
        +ED+     EYD+++PFLDSQP+
Subjt:  EEDD-----EYDINDPFLDSQPI

KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]1.6e-1754.17Show/hide
Query:  YNFSHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQPI
        YNF HA IK +K+WFA+N YLQD+ ++KNVEFLN KS LL ALAQ TT+AD Q++L+   + +SSS   +S ++ED+     EYD++D  LDSQP+
Subjt:  YNFSHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQPI

KAA0049709.1 hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]6.2e-1742.6Show/hide
Query:  MSADQYAMDLGFTQVNHPRTRNASIQIRDSMESLTPPPRPSASLMRPT-AVTPMRPSVSPTTPSSSQQGSSIPTTFYNFSHAGIKEVKQWFADNGYLQDM
        MSADQYAMDLGFT V   R+R++SI+I    ES T PP+PS +L+RP+  V  MR   SP +PSS+++ S+ PTT                    Y Q +
Subjt:  MSADQYAMDLGFTQVNHPRTRNASIQIRDSMESLTPPPRPSASLMRPT-AVTPMRPSVSPTTPSSSQQGSSIPTTFYNFSHAGIKEVKQWFADNGYLQDM

Query:  SKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDS
        +  K       +S LLAALAQ TT+AD Q++L+   + +SSS   +S ++ED+     EYD++DP+LDS
Subjt:  SKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDS

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]1.6e-1243.9Show/hide
Query:  PPRPSASLMRPTAV-TPMRPSVSPTTPSSSQQGSSIPTTF--------------------------------YNFSHAGIKEVKQWFADNGYLQDMSKKK
        PPRPSA+L+R + +   MRP  S    SS+++ S+  TT+                                YNF HA IK +K+WFADNGYLQD+ ++K
Subjt:  PPRPSASLMRPTAV-TPMRPSVSPTTPSSSQQGSSIPTTF--------------------------------YNFSHAGIKEVKQWFADNGYLQDMSKKK

Query:  NVEFLNSKSNLLAALAQTTTEAD
        N+EFLN KS LLAALAQ TT+AD
Subjt:  NVEFLNSKSNLLAALAQTTTEAD

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]2.2e-2242.41Show/hide
Query:  MSADQYAMDLGFTQVNHPRTRNASIQIRDSMESLTPPPRPSASLMRPTA-VTPMRPSVSPTTPSSSQQGSSIPTTFYNFSHAGIK-----EVKQWF----
        MS DQYAMDLG+T V   R++++ I IR  MES T PPRPS +L+ P   V  MR S S   PSS+++ S++PTT+        +     E+K +F    
Subjt:  MSADQYAMDLGFTQVNHPRTRNASIQIRDSMESLTPPPRPSASLMRPTA-VTPMRPSVSPTTPSSSQQGSSIPTTFYNFSHAGIK-----EVKQWF----

Query:  -----------ADNGYLQDMSKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQP
                     NG LQD+ ++KN +FLN K   LAAL Q T +AD Q++L+   + +SSS P  S ++ED+     EYD++DPFLDSQP
Subjt:  -----------ADNGYLQDMSKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7SNT5 Uncharacterized protein1.3e-1746.34Show/hide
Query:  PMRPSVSPTTPSSSQQGS---SIPTTFYNFSHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEV
        P   S S  +P S+ Q +      T  Y+F HA IK +K+WF +NGYLQD+ + KNV+FLN KS LLA LAQ TT+AD Q++L    + ++SS   +S +
Subjt:  PMRPSVSPTTPSSSQQGS---SIPTTFYNFSHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEV

Query:  EEDD-----EYDINDPFLDSQPI
        +ED+     EYD+++PFLDSQP+
Subjt:  EEDD-----EYDINDPFLDSQPI

A0A5A7SWC0 Uncharacterized protein7.9e-1854.17Show/hide
Query:  YNFSHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQPI
        YNF HA IK +K+WFA+N YLQD+ ++KNVEFLN KS LL ALAQ TT+AD Q++L+   + +SSS   +S ++ED+     EYD++D  LDSQP+
Subjt:  YNFSHAGIKEVKQWFADNGYLQDMSKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQPI

A0A5A7U8A0 Uncharacterized protein3.0e-1742.6Show/hide
Query:  MSADQYAMDLGFTQVNHPRTRNASIQIRDSMESLTPPPRPSASLMRPT-AVTPMRPSVSPTTPSSSQQGSSIPTTFYNFSHAGIKEVKQWFADNGYLQDM
        MSADQYAMDLGFT V   R+R++SI+I    ES T PP+PS +L+RP+  V  MR   SP +PSS+++ S+ PTT                    Y Q +
Subjt:  MSADQYAMDLGFTQVNHPRTRNASIQIRDSMESLTPPPRPSASLMRPT-AVTPMRPSVSPTTPSSSQQGSSIPTTFYNFSHAGIKEVKQWFADNGYLQDM

Query:  SKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDS
        +  K       +S LLAALAQ TT+AD Q++L+   + +SSS   +S ++ED+     EYD++DP+LDS
Subjt:  SKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDS

A0A5A7UZX0 Polyprotein7.6e-1343.9Show/hide
Query:  PPRPSASLMRPTAV-TPMRPSVSPTTPSSSQQGSSIPTTF--------------------------------YNFSHAGIKEVKQWFADNGYLQDMSKKK
        PPRPSA+L+R + +   MRP  S    SS+++ S+  TT+                                YNF HA IK +K+WFADNGYLQD+ ++K
Subjt:  PPRPSASLMRPTAV-TPMRPSVSPTTPSSSQQGSSIPTTF--------------------------------YNFSHAGIKEVKQWFADNGYLQDMSKKK

Query:  NVEFLNSKSNLLAALAQTTTEAD
        N+EFLN KS LLAALAQ TT+AD
Subjt:  NVEFLNSKSNLLAALAQTTTEAD

A0A5D3BI61 Uncharacterized protein1.1e-2242.41Show/hide
Query:  MSADQYAMDLGFTQVNHPRTRNASIQIRDSMESLTPPPRPSASLMRPTA-VTPMRPSVSPTTPSSSQQGSSIPTTFYNFSHAGIK-----EVKQWF----
        MS DQYAMDLG+T V   R++++ I IR  MES T PPRPS +L+ P   V  MR S S   PSS+++ S++PTT+        +     E+K +F    
Subjt:  MSADQYAMDLGFTQVNHPRTRNASIQIRDSMESLTPPPRPSASLMRPTA-VTPMRPSVSPTTPSSSQQGSSIPTTFYNFSHAGIK-----EVKQWF----

Query:  -----------ADNGYLQDMSKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQP
                     NG LQD+ ++KN +FLN K   LAAL Q T +AD Q++L+   + +SSS P  S ++ED+     EYD++DPFLDSQP
Subjt:  -----------ADNGYLQDMSKKKNVEFLNSKSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDD-----EYDINDPFLDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAGGTGAATCACCCAAGAACCAGAAATGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTGCCGTTACACCAATGAGACCGTCCGTCTCACCTACTACTCCATCTTCGTCTCAACAGGGATCTTCAATCCCTACAA
CCTTTTACAACTTTTCTCACGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACATGTCAAAGAAGAAAAATGTAGAGTTCCTCAATTCC
AAATCAAACCTGCTAGCTGCCTTAGCACAAACAACAACAGAGGCAGATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCTTCATCTTCTCCACAAAACTCTGA
AGTGGAAGAAGATGACGAATATGATATCAATGATCCGTTTTTAGATTCCCAACCAATTCGACAGCTGGTTGGTAAAGGTTGTGTTCCCGGCAGCAAGTGTAAGTCTGTTG
GTAAGCTCCTGTTCCCCAATAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAGGTGAATCACCCAAGAACCAGAAATGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTGCCGTTACACCAATGAGACCGTCCGTCTCACCTACTACTCCATCTTCGTCTCAACAGGGATCTTCAATCCCTACAA
CCTTTTACAACTTTTCTCACGCAGGAATCAAAGAAGTGAAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACATGTCAAAGAAGAAAAATGTAGAGTTCCTCAATTCC
AAATCAAACCTGCTAGCTGCCTTAGCACAAACAACAACAGAGGCAGATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCTTCATCTTCTCCACAAAACTCTGA
AGTGGAAGAAGATGACGAATATGATATCAATGATCCGTTTTTAGATTCCCAACCAATTCGACAGCTGGTTGGTAAAGGTTGTGTTCCCGGCAGCAAGTGTAAGTCTGTTG
GTAAGCTCCTGTTCCCCAATAACTAG
Protein sequenceShow/hide protein sequence
MSADQYAMDLGFTQVNHPRTRNASIQIRDSMESLTPPPRPSASLMRPTAVTPMRPSVSPTTPSSSQQGSSIPTTFYNFSHAGIKEVKQWFADNGYLQDMSKKKNVEFLNS
KSNLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDDEYDINDPFLDSQPIRQLVGKGCVPGSKCKSVGKLLFPNN