CuGenDBv2

Gene ID	Tan0022345
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase II subunit 1-like
Genome location	LG10:1136279..1138531
RNA-Seq Expression	Tan0022345
Synteny	Tan0022345
Gene Ontology terms	GO:0032774 - RNA biosynthetic process (biological process) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6597058.1 hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-111

76.57

Show/hide

Query:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR
        MANLPRFGRTW RFSSLPRPGTA R ++  PA  T+EPEV+PSAP T N+LQTSPI+ERS    SPVRK+PSPPTSPKYR AA  TSPRKPLSP PTYNR
Subjt:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR

Query:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ
        YDGERR+SA +SPKTFK T +SPP SPAKHKYST+T  AP SPL LP  E RHEPE M+R RSPPEVQQK++LY+K TT+EKPAKTDHRASEYSSGKPQQ
Subjt:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ

Query:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD
        KQ   QQQSDVIN+KGENVGAVMHITQSSD TE HKKKP     +EN + +NKSSSN+P KSFMNSNFQGVNNSILYNSSLSHRDPGLHL+++ KPTH D
Subjt:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD

Query:  SLH
        S+H
Subjt:  SLH

XP_022945677.1 DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata]

3.9e-111

76.24

Show/hide

Query:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR
        MANLPRFGRTW RFSSLPRPGTA R ++  PA  T+EPEV+PSAP T N+LQTSPI+ERS    SPVRK+PSPPTSPKYR AA  TSPRKPLSP PTYNR
Subjt:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR

Query:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ
        YDGERR+SA +SPKTFK T +SPP SPAKHKYST+T  AP SPL LP  E RHEPE ++R RSPPEVQQK++LY+K TT+EKPAKTDHRASEYSSGKPQQ
Subjt:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ

Query:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD
        KQ   QQQSDVIN+KGENVGAVMHITQSSD TE HKKKP     +EN + +NKSSSN+P KSFMNSNFQGVNNSILYNSSLSHRDPGLHL+++ KPTH D
Subjt:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD

Query:  SLH
        S+H
Subjt:  SLH

XP_022974813.1 DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima]

2.1e-109

75.91

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Query:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR
        MANLPRFGRTW RFSSLPRP TA R ++  PA  T+EPEVF SAP T N+LQTSPI+ERS    SPVRK+ SPPTSPKYR AA  TSPRKPLSP PTYNR
Subjt:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR

Query:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ
        YDGERR+SA +SPKTFK T +SPP SPAKHKYST+T  AP SPL LP  E RHEPE M+R RSPPEVQQK++LY+K TT+EKPAKTDHRASEYSSGKPQQ
Subjt:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ

Query:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD
        KQ   QQQSDVIN+KGENVGAVMHITQSSD TE HKKKP     +EN + +NKSSSN+P KSFMNSNFQGVNNSILYNSSLSHRDPGLHL+++ KPTH D
Subjt:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD

Query:  SLH
        S+H
Subjt:  SLH

XP_022974814.1 DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima]

1.9e-110

76.24

Show/hide

Query:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR
        MANLPRFGRTW RFSSLPRP TA R ++  PA  T+EPEVF SAP T N+LQTSPI+ERS    SPVRK+PSPPTSPKYR AA  TSPRKPLSP PTYNR
Subjt:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR

Query:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ
        YDGERR+SA +SPKTFK T +SPP SPAKHKYST+T  AP SPL LP  E RHEPE M+R RSPPEVQQK++LY+K TT+EKPAKTDHRASEYSSGKPQQ
Subjt:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ

Query:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD
        KQ   QQQSDVIN+KGENVGAVMHITQSSD TE HKKKP     +EN + +NKSSSN+P KSFMNSNFQGVNNSILYNSSLSHRDPGLHL+++ KPTH D
Subjt:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD

Query:  SLH
        S+H
Subjt:  SLH

XP_023538835.1 proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo]

3.3e-110

75.91

Show/hide

Query:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR
        MANLPRFGRTW RFSSLPRPGTA R ++  PA   +EPEV+P  P T N+LQTSPI+ERS    SPVRK+PSPPTSPKYR AA  TSPRKPLSP PTYNR
Subjt:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR

Query:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ
        YDGERRTSA +SPKTFK T +SPP SPAKHKYST+T  AP SPL LP  E RHEPE M+R RSPPEVQQK++LY+K TT+EKPAKTDHRASEYSSGKPQQ
Subjt:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ

Query:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD
        KQ   QQQSDVIN+KGENVGAVMHITQSSD TE HKKKP     +EN + +NKSSSN+P KSFMNSNFQGVNNSILYNSSLSHRDPGLHL+++ KPTH D
Subjt:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD

Query:  SLH
        S+H
Subjt:  SLH

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AVJ6 microtubule-associated protein RP/EB family member 1-like

2.4e-98

70.92

Show/hide

Query:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRER----SSPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR
        M+NLPRFGRTW RFSSLPRP TA+R E     T  TEPEVFPSA  TTN LQTSP+++R    SSPV+KFPSPP+SPKY  A    SPRKPLSP  TYNR
Subjt:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRER----SSPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR

Query:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYST-TTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHR-ASEYSSGKP
        +DGERRTSA +SPKTFKPT  SPP SP K K+ST  T  AP SPL LPRSE R EPE+ IR RSPPE++QK ILY+ TTT EKP KTD+R   +Y + KP
Subjt:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYST-TTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHR-ASEYSSGKP

Query:  QQKQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKP----INENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNK-PT
        QQKQ  QQ QSDVIN+KG+NVGAVMHITQSSDG+EI KKKP      EN EKTNKS+SN P KSFMNSNFQGVNNSILYNSSLSHRDPGLHL+YS+K P 
Subjt:  QQKQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKP----INENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNK-PT

Query:  HGDSLH
        HGDS+H
Subjt:  HGDSLH

A0A5A7TZ60 Microtubule-associated protein RP/EB family member 1-like

2.4e-98

70.92

Show/hide

Query:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRER----SSPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR
        M+NLPRFGRTW RFSSLPRP TA+R E     T  TEPEVFPSA  TTN LQTSP+++R    SSPV+KFPSPP+SPKY  A    SPRKPLSP  TYNR
Subjt:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRER----SSPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR

Query:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYST-TTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHR-ASEYSSGKP
        +DGERRTSA +SPKTFKPT  SPP SP K K+ST  T  AP SPL LPRSE R EPE+ IR RSPPE++QK ILY+ TTT EKP KTD+R   +Y + KP
Subjt:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYST-TTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHR-ASEYSSGKP

Query:  QQKQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKP----INENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNK-PT
        QQKQ  QQ QSDVIN+KG+NVGAVMHITQSSDG+EI KKKP      EN EKTNKS+SN P KSFMNSNFQGVNNSILYNSSLSHRDPGLHL+YS+K P 
Subjt:  QQKQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKP----INENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNK-PT

Query:  HGDSLH
        HGDS+H
Subjt:  HGDSLH

A0A6J1G1L2 DNA-directed RNA polymerase II subunit 1-like

1.9e-111

76.24

Show/hide

Query:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR
        MANLPRFGRTW RFSSLPRPGTA R ++  PA  T+EPEV+PSAP T N+LQTSPI+ERS    SPVRK+PSPPTSPKYR AA  TSPRKPLSP PTYNR
Subjt:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR

Query:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ
        YDGERR+SA +SPKTFK T +SPP SPAKHKYST+T  AP SPL LP  E RHEPE ++R RSPPEVQQK++LY+K TT+EKPAKTDHRASEYSSGKPQQ
Subjt:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ

Query:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD
        KQ   QQQSDVIN+KGENVGAVMHITQSSD TE HKKKP     +EN + +NKSSSN+P KSFMNSNFQGVNNSILYNSSLSHRDPGLHL+++ KPTH D
Subjt:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD

Query:  SLH
        S+H
Subjt:  SLH

A0A6J1IEX0 DNA-directed RNA polymerase II subunit 1-like isoform X2

9.4e-111

76.24

Show/hide

Query:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR
        MANLPRFGRTW RFSSLPRP TA R ++  PA  T+EPEVF SAP T N+LQTSPI+ERS    SPVRK+PSPPTSPKYR AA  TSPRKPLSP PTYNR
Subjt:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR

Query:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ
        YDGERR+SA +SPKTFK T +SPP SPAKHKYST+T  AP SPL LP  E RHEPE M+R RSPPEVQQK++LY+K TT+EKPAKTDHRASEYSSGKPQQ
Subjt:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ

Query:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD
        KQ   QQQSDVIN+KGENVGAVMHITQSSD TE HKKKP     +EN + +NKSSSN+P KSFMNSNFQGVNNSILYNSSLSHRDPGLHL+++ KPTH D
Subjt:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD

Query:  SLH
        S+H
Subjt:  SLH

A0A6J1IHF4 DNA-directed RNA polymerase II subunit 1-like isoform X1

1.0e-109

75.91

Show/hide

Query:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR
        MANLPRFGRTW RFSSLPRP TA R ++  PA  T+EPEVF SAP T N+LQTSPI+ERS    SPVRK+ SPPTSPKYR AA  TSPRKPLSP PTYNR
Subjt:  MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERS----SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNR

Query:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ
        YDGERR+SA +SPKTFK T +SPP SPAKHKYST+T  AP SPL LP  E RHEPE M+R RSPPEVQQK++LY+K TT+EKPAKTDHRASEYSSGKPQQ
Subjt:  YDGERRTSAPSSPKTFKPTPSSPPLSPAKHKYSTTTTAAPPSPL-LPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQ

Query:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD
        KQ   QQQSDVIN+KGENVGAVMHITQSSD TE HKKKP     +EN + +NKSSSN+P KSFMNSNFQGVNNSILYNSSLSHRDPGLHL+++ KPTH D
Subjt:  KQKQQQQQSDVINMKGENVGAVMHITQSSDGTEIHKKKPI----NENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGD

Query:  SLH
        S+H
Subjt:  SLH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G46630.1 unknown protein

1.4e-10

29.82

Show/hide

Query:  PSAPTTTNILQTSPIRERS---SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNRYDGERRTSAPSSPKTFKPT-----PSSPPLSPAKHKYSTTTT
        P  P       TSP +ERS   SP  +  SPPT PK  T            P P  + Y      ++P SPK  +       P+SPP SPA    STT+ 
Subjt:  PSAPTTTNILQTSPIRERS---SPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNRYDGERRTSAPSSPKTFKPT-----PSSPPLSPAKHKYSTTTT

Query:  AAPPSPLLPRSEPRHEPEQMIRS---------RSPPEVQQKTILYEKTTTAEKPAKT------------------------DHRASEYSSGKPQQKQKQQ
        +            R  P   + S          S  E  QK IL     TAEK ++T                         +  ++   G   +K  +Q
Subjt:  AAPPSPLLPRSEPRHEPEQMIRS---------RSPPEVQQKTILYEKTTTAEKPAKT------------------------DHRASEYSSGKPQQKQKQQ

Query:  QQQSD--------VINMKGENVGAVMHITQSSDGTE-----IHKKKPINENAEK-------------------------TNKSSSNLPPKSFMNSNFQGV
           SD        VI + GEN GAVM I +S  G +      H  +  +   EK                          NK +SNLP K+FMNSN Q +
Subjt:  QQQSD--------VINMKGENVGAVMHITQSSDGTE-----IHKKKPINENAEK-------------------------TNKSSSNLPPKSFMNSNFQGV

Query:  NNSILYNSSLSHRDPGLHLSYSNKPTHGDSLH
        NNSI+YNS+ SH DPG+HL  S KP   +  H
Subjt:  NNSILYNSSLSHRDPGLHLSYSNKPTHGDSLH

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAAATCTTCCTCGTTTTGGCCGTACATGGCAACGTTTCTCTTCTCTACCTCGCCCCGGAACTGCCTCACGGCCTGAAATAATTCAGCCGGCGACGGTGACGACGGA
GCCAGAAGTTTTTCCCTCTGCTCCAACAACCACTAATATTCTTCAAACTTCCCCTATTAGAGAAAGATCATCTCCGGTGAGGAAATTTCCCTCGCCGCCTACTTCTCCAA
AATACAGGACCGCCGCCACAATCACTTCGCCTCGTAAGCCGTTATCTCCAACTCCGACATACAACCGCTACGACGGCGAACGACGGACCAGTGCCCCTTCATCTCCAAAA
ACCTTCAAACCAACTCCCAGCTCTCCGCCACTGTCGCCGGCCAAGCATAAATATTCAACCACCACTACCGCCGCACCACCTTCTCCTCTTCTGCCACGCTCGGAGCCAAG
ACATGAACCTGAGCAAATGATTCGATCCAGGAGCCCACCGGAGGTGCAGCAGAAAACCATCCTTTACGAAAAGACGACGACGGCGGAGAAGCCTGCGAAAACCGACCACC
GAGCATCGGAGTACAGCTCCGGCAAACCCCAGCAGAAGCAGAAGCAGCAGCAGCAGCAAAGTGATGTTATAAATATGAAAGGCGAGAATGTGGGGGCCGTCATGCACATC
ACTCAATCGTCTGATGGAACAGAAATTCATAAGAAAAAGCCAATCAACGAAAATGCTGAAAAAACAAACAAATCAAGCTCTAATTTGCCACCAAAATCGTTCATGAACAG
CAATTTTCAAGGCGTCAACAATTCCATTCTCTACAATTCGTCTTTGAGTCATCGTGATCCTGGCCTGCACCTTTCTTACTCCAACAAGCCCACCCATGGCGATTCTCTTC
ATCATTGA

mRNA sequence

Show/hide mRNA sequence

AATCATTTTAAAATTTTTAATTTTAATTATTATAAACAAACTCTCTTTTCTTTATTATTATGGCAAATCTTCCTCGTTTTGGCCGTACATGGCAACGTTTCTCTTCTCTA
CCTCGCCCCGGAACTGCCTCACGGCCTGAAATAATTCAGCCGGCGACGGTGACGACGGAGCCAGAAGTTTTTCCCTCTGCTCCAACAACCACTAATATTCTTCAAACTTC
CCCTATTAGAGAAAGATCATCTCCGGTGAGGAAATTTCCCTCGCCGCCTACTTCTCCAAAATACAGGACCGCCGCCACAATCACTTCGCCTCGTAAGCCGTTATCTCCAA
CTCCGACATACAACCGCTACGACGGCGAACGACGGACCAGTGCCCCTTCATCTCCAAAAACCTTCAAACCAACTCCCAGCTCTCCGCCACTGTCGCCGGCCAAGCATAAA
TATTCAACCACCACTACCGCCGCACCACCTTCTCCTCTTCTGCCACGCTCGGAGCCAAGACATGAACCTGAGCAAATGATTCGATCCAGGAGCCCACCGGAGGTGCAGCA
GAAAACCATCCTTTACGAAAAGACGACGACGGCGGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCCGGCAAACCCCAGCAGAAGCAGAAGCAGCAGC
AGCAGCAAAGTGATGTTATAAATATGAAAGGCGAGAATGTGGGGGCCGTCATGCACATCACTCAATCGTCTGATGGAACAGAAATTCATAAGAAAAAGCCAATCAACGAA
AATGCTGAAAAAACAAACAAATCAAGCTCTAATTTGCCACCAAAATCGTTCATGAACAGCAATTTTCAAGGCGTCAACAATTCCATTCTCTACAATTCGTCTTTGAGTCA
TCGTGATCCTGGCCTGCACCTTTCTTACTCCAACAAGCCCACCCATGGCGATTCTCTTCATCATTGATCTTCAAGGCTTTCATATATATATGCTAAAATAATTATGAATA
AAGGAACAACATCAATATTATATATGATAATATATATATATATAATTAAATTAAACCATTTTATATATTCATATATATGATTCATATATGGGATGTATTTTCATATGCTC
TTACTATTTGGAAAATGAGTTATTAATAATAAAAGCTTTTAC

Protein sequence

Show/hide protein sequence

MANLPRFGRTWQRFSSLPRPGTASRPEIIQPATVTTEPEVFPSAPTTTNILQTSPIRERSSPVRKFPSPPTSPKYRTAATITSPRKPLSPTPTYNRYDGERRTSAPSSPK
TFKPTPSSPPLSPAKHKYSTTTTAAPPSPLLPRSEPRHEPEQMIRSRSPPEVQQKTILYEKTTTAEKPAKTDHRASEYSSGKPQQKQKQQQQQSDVINMKGENVGAVMHI
TQSSDGTEIHKKKPINENAEKTNKSSSNLPPKSFMNSNFQGVNNSILYNSSLSHRDPGLHLSYSNKPTHGDSLHH

Tan0022345 (gene) of Snake gourd v1 genome