CuGenDBv2

Gene ID	Tan0022351
Organism	Trichosanthes anguina (Snake gourd v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like
Genome location	LG06:6556618..6564978
RNA-Seq Expression	Tan0022351
Synteny	Tan0022351
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR003772 - Large ribosomal RNA subunit accumulation protein YceD

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0067976.1 uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]

7.0e-154

84.66

Show/hide

Query:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM
        M ATFPTSS+VSSSH   FI V   KSKGN SFNSHFR     VPW FM NIQ SLG  DPCI +KSTS+KCVKPTYQS FEDN+IITDW DQEGDIEEM
Subjt:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM

Query:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV
        GSPWEGAVIYKRNSSVSHVEYCTTLE LGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK KKLRLDGIVKTVITLNCYRCCEPAPEC+
Subjt:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV

Query:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC
        FSNFSI+LSEEPIEEP+VINMGIISGQD+FKT +GNSDEDDEE +DLDDQLYFP  +KEIDISKNIRDILHLEIT+N IC+PGCKGMCL CGINLNTGSC
Subjt:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

KAG6593211.1 Large ribosomal RNA subunit accumulation protein YCED-like 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

7.8e-153

83.74

Show/hide

Query:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM
        MSA FPTS++VS    NGFIK+ CLKSKG A  NS+FRFV CK+P T M NI  SLG+S  CI LKSTSLKCVKP+ +SFFEDNTIITDWEDQEG+IEEM
Subjt:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM

Query:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV
         SPWEGA+IYKRNSSVSH+EYCTTLE LGLEKLSTDVSKSRAS+MGL +TKAVKDYP GTPVQISVDVTRK KKLRLDGIVKTVITLNCYRCCEPA ECV
Subjt:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV

Query:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC
        FSNFSI+LS++P++EPEVIN+G+I+GQDMFKTYDG  DEDDEE IDLDDQLYFPL EKEIDISKNIRD+LHLEITLNAICD GCKGMCLKCGINLNTGSC
Subjt:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQDVKKNDFGPLGNL+RQMQKNS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

XP_022933174.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like [Cucurbita moschata]

1.2e-153

84.36

Show/hide

Query:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM
        MSA FPTS++VS    NGFIK+ CLKSKG A  NS+FRFV CK+P T M NI  SLG+S  CI LKSTSLKCVKPT +SFFEDNTIITDWEDQEG+IEEM
Subjt:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM

Query:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV
         SPWEGA+IYKRNSSVSH+EYCTTLE LGLEKLSTDVSKSRAS+MGL +TKAVKDYP GTPVQISVDVTRK KKLRLDGIVKTVITLNCYRCCEPA ECV
Subjt:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV

Query:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC
        FSNFSI+LS++P++EPEVIN+G+I+GQDMFKTYDG  DEDDEE IDLDDQLYFPL EKEIDISKNIRD+LHLEITLNAICD GCKGMCLKCGINLNTGSC
Subjt:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQDVKKNDFGPLGNLKRQMQKNS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

XP_023514713.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [Cucurbita pepo subsp. pepo]

1.9e-154

84.66

Show/hide

Query:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM
        MSA FPTS++VS    NGFIK+ CLKSKG A  NS+FRFV CK+P TFM NI  SLG+S  CI LKSTSLKCVKPT +SFFEDNTIITDWEDQEG+IEEM
Subjt:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM

Query:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV
         SPWEGA+IYKRNSSVSH+EYCTTLE LGLEKLSTDVSKSRAS+MGL +TKAVKDYP GTPVQISVDVTRK KKLRLDGIVKTVITLNCYRCCEPA ECV
Subjt:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV

Query:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC
        FSNFSI+LS++PI+EPEVIN+G+I+GQDMFKTYDG  DEDDEE IDLDDQLYFPL EKEIDISKNIRD+LHLEITLNAICD GCKGMCLKCGINLNTGSC
Subjt:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQDV+KNDFGPLGNLKRQMQKNS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

XP_038897008.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like [Benincasa hispida]

2.1e-158

87.73

Show/hide

Query:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM
        MSATFPTSS+VSSSH N FIKV  LKSKGN SF+SH     C+VPW FM NIQ SLG+S  CIMLKSTS+KCVKPTYQS FEDN+IITDWED +GDIEEM
Subjt:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM

Query:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV
        GSPWEGAVIYKRNSSVSHVEYCTTLE LGLEKLSTDVSKSRAS MGLR+ K VKDYP GTPVQISVDVTRK KKLRLDGIVKTVITLNCYRCCE APEC+
Subjt:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV

Query:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC
        FSNFSIILSEEPIEEP+VINMGIISGQDMFKTYDGNSDEDDEEL+DLDDQLYFPL EKEIDISKNIRDILHLEIT+NAICDPGCKGMCL CGINLNTGSC
Subjt:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLK+QMQKNS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X2

4.9e-153

84.05

Show/hide

Query:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM
        M ATFPTSS+VSSSH   FI V   +SKGN SFNSHFR     VPW FM NIQ SLG  DPCI +KSTS+KCVKPTYQS FEDN+IITDW DQEGDIEEM
Subjt:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM

Query:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV
         SPWEGAVIYKRNSSVSHVEYCTTLE LGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK KKLRLDGIVKTVITLNCYRCCEPAPEC+
Subjt:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV

Query:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC
        FSNFSI+LSEEPIEEP+VINMGIISGQD+FKT +GNSDEDDEE +DLDDQLYFP  +KEIDISKNIRDILHLEIT+N IC+PGCKGMCL CGINLNTGSC
Subjt:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X1

4.9e-153

84.05

Show/hide

Query:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM
        M ATFPTSS+VSSSH   FI V   +SKGN SFNSHFR     VPW FM NIQ SLG  DPCI +KSTS+KCVKPTYQS FEDN+IITDW DQEGDIEEM
Subjt:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM

Query:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV
         SPWEGAVIYKRNSSVSHVEYCTTLE LGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK KKLRLDGIVKTVITLNCYRCCEPAPEC+
Subjt:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV

Query:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC
        FSNFSI+LSEEPIEEP+VINMGIISGQD+FKT +GNSDEDDEE +DLDDQLYFP  +KEIDISKNIRDILHLEIT+N IC+PGCKGMCL CGINLNTGSC
Subjt:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

A0A5A7VN29 Uncharacterized protein

3.4e-154

84.66

Show/hide

Query:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM
        M ATFPTSS+VSSSH   FI V   KSKGN SFNSHFR     VPW FM NIQ SLG  DPCI +KSTS+KCVKPTYQS FEDN+IITDW DQEGDIEEM
Subjt:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM

Query:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV
        GSPWEGAVIYKRNSSVSHVEYCTTLE LGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK KKLRLDGIVKTVITLNCYRCCEPAPEC+
Subjt:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV

Query:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC
        FSNFSI+LSEEPIEEP+VINMGIISGQD+FKT +GNSDEDDEE +DLDDQLYFP  +KEIDISKNIRDILHLEIT+N IC+PGCKGMCL CGINLNTGSC
Subjt:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

A0A5D3D2J4 Uncharacterized protein

9.3e-152

83.74

Show/hide

Query:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM
        M ATFPTSS+VSSSH   FI V   KSKGN SFNS  R      PW FM NIQ SLG  DPCI +KSTS+KCVKPTYQS FEDN+IITDW DQEGDIEEM
Subjt:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM

Query:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV
        GSPWEGAVIYKRNSSVSHVEYCTTLE LGLEKLSTDVSKSRAS MGLR+TK VKDYP GTPVQISVDVTRK KKLRLDGIVKTVITLNCYRCCEPAPEC+
Subjt:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV

Query:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC
        FSNFSI+LSEEPIEEP+VINMGIISGQD+FKT +GNSDEDDEE +DLDDQLYFP  +KEIDISKNIRDILHLEIT+N IC+PGCKGMCL CGINLNTGSC
Subjt:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

A0A6J1H6G2 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like

5.8e-154

84.36

Show/hide

Query:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM
        MSA FPTS++VS    NGFIK+ CLKSKG A  NS+FRFV CK+P T M NI  SLG+S  CI LKSTSLKCVKPT +SFFEDNTIITDWEDQEG+IEEM
Subjt:  MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEM

Query:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV
         SPWEGA+IYKRNSSVSH+EYCTTLE LGLEKLSTDVSKSRAS+MGL +TKAVKDYP GTPVQISVDVTRK KKLRLDGIVKTVITLNCYRCCEPA ECV
Subjt:  GSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECV

Query:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC
        FSNFSI+LS++P++EPEVIN+G+I+GQDMFKTYDG  DEDDEE IDLDDQLYFPL EKEIDISKNIRD+LHLEITLNAICD GCKGMCLKCGINLNTGSC
Subjt:  FSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQDVKKNDFGPLGNLKRQMQKNS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

SwissProt top hits

e value

%identity

Alignment

A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

1.7e-54

49.37

Show/hide

Query:  FFEDNTIITDWEDQEGDIEE-MGSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLR-ITKAVKDYPSGTPVQISVDVTRKGKKLRL
        FF      T  E +   I++ + SPWEGAV+Y+R+++V H+EY +TLE LGL  LS+  S++RA+ +GL   T         TPV +SVDVTR+  +LRL
Subjt:  FFEDNTIITDWEDQEGDIEE-MGSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLR-ITKAVKDYPSGTPVQISVDVTRKGKKLRL

Query:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVINMGIISGQDMFK-------TYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDIL
        DGIV+TVITL C+RC EPAP+ +F+NFS++L+E+P+EE    ++G I  +D  K         DG+ D      ID DD+L+FP A+KEIDISK+IRD++
Subjt:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVINMGIISGQDMFK-------TYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDIL

Query:  HLEITLNAICDPGCKGMCLKCGINLN-TGSCNCSKQDVK
        HLEITL+A+C+P CKG+CL CG NLN T SC C  ++V+
Subjt:  HLEITLNAICDPGCKGMCLKCGINLN-TGSCNCSKQDVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

5.5e-85

63.56

Show/hide

Query:  QSFFEDNTIITDWEDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRL
        +SF E +TI  DWEDQE +IE+ GSPWEG+V+Y+RN+SV+HVEYCTTLE LGL +LSTDVSK RAS MGLR+TK VKDYP GTPVQ+SVDV RK KKLRL
Subjt:  QSFFEDNTIITDWEDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRL

Query:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLN
        DGIV+TVITL C RC E   E +FSNFS++L+EEP+EEP+VI++G   G D  K    + D++D+  ID +D+L+FP   KEIDISK+IRD++HLEIT+ 
Subjt:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLN

Query:  AICDPGCKGMCLKCGINLNTGSCNCSKQDVKKNDFGPLGNLKRQMQK
        AICD  CKGMCLKCG NLN   C+C +++ K   +GPLGNL+ QMQ+
Subjt:  AICDPGCKGMCLKCGINLNTGSCNCSKQDVKKNDFGPLGNLKRQMQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G19810.1 Protein of unknown function (DUF177)

3.9e-86

63.56

Show/hide

Query:  QSFFEDNTIITDWEDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRL
        +SF E +TI  DWEDQE +IE+ GSPWEG+V+Y+RN+SV+HVEYCTTLE LGL +LSTDVSK RAS MGLR+TK VKDYP GTPVQ+SVDV RK KKLRL
Subjt:  QSFFEDNTIITDWEDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRL

Query:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLN
        DGIV+TVITL C RC E   E +FSNFS++L+EEP+EEP+VI++G   G D  K    + D++D+  ID +D+L+FP   KEIDISK+IRD++HLEIT+ 
Subjt:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLN

Query:  AICDPGCKGMCLKCGINLNTGSCNCSKQDVKKNDFGPLGNLKRQMQK
        AICD  CKGMCLKCG NLN   C+C +++ K   +GPLGNL+ QMQ+
Subjt:  AICDPGCKGMCLKCGINLNTGSCNCSKQDVKKNDFGPLGNLKRQMQK

Sequences

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CDS sequence

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ATGTCAGCTACATTTCCCACATCATCCATAGTTTCATCTTCTCATTTCAATGGATTTATTAAGGTTTGCTGCTTGAAATCCAAAGGGAATGCTTCTTTCAATTCCCATTT
CCGCTTTGTTGATTGTAAAGTTCCATGGACATTTATGAACAATATTCAGTCAAGCTTGGGTGAGTCTGACCCATGTATTATGCTGAAATCTACTTCCCTAAAGTGTGTGA
AACCTACTTATCAGTCCTTTTTTGAAGACAATACAATAATTACTGATTGGGAGGATCAAGAAGGGGACATTGAAGAGATGGGCTCACCATGGGAAGGAGCAGTAATTTAC
AAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGTCTTGGATTAGAAAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCCAAGATGGGTCT
ACGCATAACGAAAGCTGTGAAAGATTATCCCTCTGGAACGCCTGTTCAAATCTCTGTTGATGTTACAAGGAAAGGAAAAAAGTTGAGGCTTGATGGGATTGTTAAAACTG
TCATCACTCTCAATTGTTATAGGTGTTGCGAACCTGCTCCTGAATGCGTTTTCTCAAATTTCTCAATTATACTAAGCGAAGAACCGATTGAAGAACCTGAGGTCATAAAT
ATGGGAATCATCAGTGGGCAGGATATGTTCAAGACATATGATGGAAATAGTGATGAAGATGATGAAGAGTTAATTGATTTGGATGATCAACTCTATTTTCCTCTTGCAGA
GAAAGAAATAGATATATCAAAAAACATAAGAGACATCTTGCATCTGGAAATTACTTTGAATGCGATATGCGATCCGGGATGCAAAGGTATGTGTCTGAAATGTGGTATAA
ATTTGAATACTGGAAGCTGTAACTGTAGTAAGCAGGATGTAAAGAAGAACGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAATGCAGAAAAATTCTTAA

mRNA sequence

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AAAATTTTTCGGCAGAGCGTCACCAAAATTTCCACCATTTTCGCGAACTAAGGATGGGATTGTTTTCGCTGGACTTCATTAATTGACTAGTTTATATAATTTGCAGAGTC
AGTGTTATTTATATCTGGGAATTTCCTTATCCAATTTCTATGAGCAGTATTTAAGATGTCAGCTACATTTCCCACATCATCCATAGTTTCATCTTCTCATTTCAATGGAT
TTATTAAGGTTTGCTGCTTGAAATCCAAAGGGAATGCTTCTTTCAATTCCCATTTCCGCTTTGTTGATTGTAAAGTTCCATGGACATTTATGAACAATATTCAGTCAAGC
TTGGGTGAGTCTGACCCATGTATTATGCTGAAATCTACTTCCCTAAAGTGTGTGAAACCTACTTATCAGTCCTTTTTTGAAGACAATACAATAATTACTGATTGGGAGGA
TCAAGAAGGGGACATTGAAGAGATGGGCTCACCATGGGAAGGAGCAGTAATTTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGTCTTG
GATTAGAAAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCCAAGATGGGTCTACGCATAACGAAAGCTGTGAAAGATTATCCCTCTGGAACGCCTGTTCAAATCTCT
GTTGATGTTACAAGGAAAGGAAAAAAGTTGAGGCTTGATGGGATTGTTAAAACTGTCATCACTCTCAATTGTTATAGGTGTTGCGAACCTGCTCCTGAATGCGTTTTCTC
AAATTTCTCAATTATACTAAGCGAAGAACCGATTGAAGAACCTGAGGTCATAAATATGGGAATCATCAGTGGGCAGGATATGTTCAAGACATATGATGGAAATAGTGATG
AAGATGATGAAGAGTTAATTGATTTGGATGATCAACTCTATTTTCCTCTTGCAGAGAAAGAAATAGATATATCAAAAAACATAAGAGACATCTTGCATCTGGAAATTACT
TTGAATGCGATATGCGATCCGGGATGCAAAGGTATGTGTCTGAAATGTGGTATAAATTTGAATACTGGAAGCTGTAACTGTAGTAAGCAGGATGTAAAGAAGAACGATTT
TGGTCCTCTTGGAAATTTGAAAAGGCAAATGCAGAAAAATTCTTAACGTTGTTGAATGCATAAAATCTGTTCCTTTTCATCAAATCCTTTCTTTCTAACAAATTTGTGTT
GTCTTCCTCTTAGCTGAGCTTGTTTACAACCATCTTTTTGTAATTCCATTCCCATTGCCTTTTAACCTTTGTTAAGTTAGAGAACCTGCAATACTGAAAAAAT

Protein sequence

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MSATFPTSSIVSSSHFNGFIKVCCLKSKGNASFNSHFRFVDCKVPWTFMNNIQSSLGESDPCIMLKSTSLKCVKPTYQSFFEDNTIITDWEDQEGDIEEMGSPWEGAVIY
KRNSSVSHVEYCTTLESLGLEKLSTDVSKSRASKMGLRITKAVKDYPSGTPVQISVDVTRKGKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVIN
MGIISGQDMFKTYDGNSDEDDEELIDLDDQLYFPLAEKEIDISKNIRDILHLEITLNAICDPGCKGMCLKCGINLNTGSCNCSKQDVKKNDFGPLGNLKRQMQKNS

Tan0022351 (gene) of Snake gourd v1 genome