CuGenDBv2

Gene ID	Tan0022430
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ribosomal RNA-processing protein 17-like
Genome location	LG03:77857543..77860486
RNA-Seq Expression	Tan0022430
Synteny	Tan0022430
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7026594.1 hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.3e-75

85.86

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Query:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND
        MVK EAEEGG L QP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEK+LVL+GGVLPADRPVDEQND
Subjt:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND

Query:  D----HEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK
        D     EDEEE PLAPISETTTYDSGNIKVTVTTSEV R+EE DPIDK Q +T+QLLAKDKKH+LP+TKKKPFKKVAR+KSR + R+K DKKKGRKKK
Subjt:  D----HEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK

XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]

9.9e-79

88.14

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Query:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND
        MVK + +EGGELAQPR RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EK+LVLYGG+LPADRPVDEQND
Subjt:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK
        DHE+EEE+P APISETTTYDSGNIKVTV TSEVSR+ E  PIDK QTATTQL+AKDKKHNLPITKKKPFKKVA+QKSRP+PR+KRDKKKGRKKK
Subjt:  DHEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK

XP_022926799.1 ribosomal RNA-processing protein 17 [Cucurbita moschata]

2.3e-75

86.36

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Query:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND
        MVK EAEEGG L QP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVL+GGVLPADRPVDEQND
Subjt:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND

Query:  D----HEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK
        D     EDEEE+PLAPISETT YDSGNIKVTVTTSEV R+EE DPIDK Q +T+QLLAKDKKH+LPITKKKPFKKVAR+KSR + R+K DKKKGRKKK
Subjt:  D----HEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

1.7e-75

85.86

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Query:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND
        MVK EAEEGG L QP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEK+LVL+GGVLPADRPVDEQND
Subjt:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND

Query:  D----HEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK
        D     EDEEE+PLAPISETTTYDSGNIKVTVTTSEV R+EE DPIDK Q +T+QLLAKDKKH+LP+TKKKPFKKVAR+KSR + R+K DKKKGRKKK
Subjt:  D----HEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]

2.3e-75

83.84

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Query:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND
        MV+ + EEG ELAQP ARHIKKRAL+NKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQQEEA RRKRIE RKKR++EKDLVLYGGVLPADRPVDE+ND
Subjt:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND

Query:  DH----EDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK
        DH    EDEEE+PLAP SETTTYDSGNIKVTV TSEVSREEE DPIDK QTATTQL AKDKKHNLP+TKKKPFKKVA+Q+SRP+ R+KRDK+KG+KKK
Subjt:  DH----EDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

7.4e-72

82.65

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Query:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND
        MVK + EEGGELAQP ARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVL+GGVLPADR VD+QND
Subjt:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTA--TTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK
        D  +EEEEPLAP+SE TTYD+GN+KVTVTTSEVSRE+E DPIDK QTA  T QLL KDKKHNLPITKKK FKKVA+Q+ RP+ R+KRDKKKGRKKK
Subjt:  DHEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTA--TTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK

A0A1S3C1A3 ribosomal RNA-processing protein 17

4.6e-74

85.05

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Query:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND
        MVK + EEGGELAQP ARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVLYGGVLPADR VD+QND
Subjt:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK
        D EDEEEEPLAP SE  TYD+GN+KVTVTTSEVSRE E DPIDK QTA  QLL KDKKHNLPITKKK FKKVA+Q+SRP+ R+KRDKKKGRKKK
Subjt:  DHEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

4.8e-79

88.14

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Query:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND
        MVK + +EGGELAQPR RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EK+LVLYGG+LPADRPVDEQND
Subjt:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND

Query:  DHEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK
        DHE+EEE+P APISETTTYDSGNIKVTV TSEVSR+ E  PIDK QTATTQL+AKDKKHNLPITKKKPFKKVA+QKSRP+PR+KRDKKKGRKKK
Subjt:  DHEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK

A0A6J1EG67 ribosomal RNA-processing protein 17

1.1e-75

86.36

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Query:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND
        MVK EAEEGG L QP ARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVL+GGVLPADRPVDEQND
Subjt:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND

Query:  D----HEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK
        D     EDEEE+PLAPISETT YDSGNIKVTVTTSEV R+EE DPIDK Q +T+QLLAKDKKH+LPITKKKPFKKVAR+KSR + R+K DKKKGRKKK
Subjt:  D----HEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

2.5e-75

85.86

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Query:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND
        MVK EA EGG L QP +RH+KK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVL+GGVLPADRPVDEQND
Subjt:  MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQND

Query:  D----HEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK
        D     EDEEE+PLAPISETTTYDSGNIKVTVTTSEV REEE DPIDK Q +T+QLLAKDKKH+LPITKKKPFKKVAR+KSR + R+K DKKKGRKKK
Subjt:  D----HEDEEEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

7.1e-35

57.22

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Query:  EEGGELAQP-RARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQNDDHEDE
        EE G LA P  ARHI KRA KNK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA RRKRIE RK RK+E+ +V   G    D   +++  D EDE
Subjt:  EEGGELAQP-RARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQNDDHEDE

Query:  EEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDK---KHNLPITKKKPFKKVARQKSRPRPRNKRDKKK
        E EP A  S TT YD+G +KVTVTTSE+SREEE +PI K +T +T+  +  K   K  +P+ K KP K+ +R++S  +   KRDKKK
Subjt:  EEEPLAPISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDK---KHNLPITKKKPFKKVARQKSRPRPRNKRDKKK

Sequences

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CDS sequence

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ATGGTGAAGACCGAAGCGGAGGAAGGGGGTGAGCTCGCGCAGCCTCGTGCTCGACACATAAAGAAGAGAGCTCTCAAGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAA
AGATTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCGGAGAAGCAACAAGAGGAAGCTAAGCGGCGGAAGCGCATCGAAGAACGCA
AAAAGAGAAAAATAGAAAAAGATCTGGTGCTATATGGCGGTGTTCTACCAGCTGACCGGCCAGTTGATGAGCAGAATGATGATCACGAGGATGAGGAAGAGGAGCCATTG
GCACCAATTTCTGAGACAACAACGTATGACAGTGGAAATATCAAAGTCACTGTGACAACAAGTGAGGTATCTCGAGAAGAAGAAACCGATCCCATTGACAAGCTACAGAC
TGCAACAACCCAACTGTTAGCAAAGGATAAGAAGCATAACCTGCCAATTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAGACAGAAGTCAAGGCCAAGGCCCCGAAATA
AAAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

mRNA sequence

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TTCGAACCGAATTGAATGTGAAGCAGAGAGTGTAACGGGGCGCTGCGATGGTGAAGACCGAAGCGGAGGAAGGGGGTGAGCTCGCGCAGCCTCGTGCTCGACACATAAAG
AAGAGAGCTCTCAAGAACAAAGCTCTTTCTGTCTCTTTCAATGAGAAAGATTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCGGA
GAAGCAACAAGAGGAAGCTAAGCGGCGGAAGCGCATCGAAGAACGCAAAAAGAGAAAAATAGAAAAAGATCTGGTGCTATATGGCGGTGTTCTACCAGCTGACCGGCCAG
TTGATGAGCAGAATGATGATCACGAGGATGAGGAAGAGGAGCCATTGGCACCAATTTCTGAGACAACAACGTATGACAGTGGAAATATCAAAGTCACTGTGACAACAAGT
GAGGTATCTCGAGAAGAAGAAACCGATCCCATTGACAAGCTACAGACTGCAACAACCCAACTGTTAGCAAAGGATAAGAAGCATAACCTGCCAATTACCAAAAAGAAGCC
ATTCAAGAAAGTTGCAAGACAGAAGTCAAGGCCAAGGCCCCGAAATAAAAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAGGTCGTTATACTAAAAGCTTTTTACTCTT
TACTAAATGCTCGATGTCATATGATTTATATGTTATCTCATGAGAATAGGGTGTGGTCTTTGAGCATGGGCTGTAGGGAATTTGAGGGTTTTGTATTACTTTGTAAAAGT
TTGGCCATTTTGCAAATTGGAAGTGCAATTTAACTTTTATGAGAAGCTGAAATGAAAGTATTAGATCTCAATTCATCAAGTATTGAAAAATTCTCTTATTACTTCATTGG
AAGTATGTACAGTACATGTCTGATGATATATTTAATCTCAGCGTTCACCAGCTTTGCTTCCTTGGTCATTCCTTATCTCTGTGGCCTTTGGGTGAGATCAAACCTGAACA
TCTTCTTTTGGACACAGTTCGATTTTGAGACCCAATCCTATTTTCTAACGTGCAAATGGAAATAAGGTTCGGATCCTATAGTTGTAATAAAATTTCAAGTCGGTAGCTTC
TTTAGTTTATTTTTAAGATGTTTTTATGCAATCTTGTAGCACATTTTTCTTAATTCCGAAG

Protein sequence

Show/hide protein sequence

MVKTEAEEGGELAQPRARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLYGGVLPADRPVDEQNDDHEDEEEEPL
APISETTTYDSGNIKVTVTTSEVSREEETDPIDKLQTATTQLLAKDKKHNLPITKKKPFKKVARQKSRPRPRNKRDKKKGRKKK

Tan0022430 (gene) of Snake gourd v1 genome