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Tan0022449 (gene) of Snake gourd v1 genome

Gene IDTan0022449
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG04:43409890..43429373
RNA-Seq ExpressionTan0022449
SyntenyTan0022449
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1151.65Show/hide
Query:  LVQIELPVPDNLPYSTSLI---CCTWVELYRMSICVVVNY--VYQVKQSQHVLL------GGNNVCWLHAVFQAKLAGGSGGGVTTWYQSR
        LV+IELPVPD LP S         TW+ELY  S+ V + Y  + Q K+ Q  +L       G++VCWLHA+F+AK AGG GGGVTTWYQS+
Subjt:  LVQIELPVPDNLPYSTSLI---CCTWVELYRMSICVVVNY--VYQVKQSQHVLL------GGNNVCWLHAVFQAKLAGGSGGGVTTWYQSR

KAA0054351.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-0940.68Show/hide
Query:  ETLFIGVSTLRMPRANRSSVRAKVLVQIELPVPDNL---PYSTSLICCTWVELYRMSI-----CVVVN-------YVYQVKQSQHVLLGGNNVCWLHAVF
        +T+   +STL + R N        +V+I+L VPD L     S+     TW+ELY  S+     C   N        V+ V      ++ G+NVCWLHAVF
Subjt:  ETLFIGVSTLRMPRANRSSVRAKVLVQIELPVPDNL---PYSTSLICCTWVELYRMSI-----CVVVN-------YVYQVKQSQHVLLGGNNVCWLHAVF

Query:  QAKLAGGSGGGVTTWYQS
        +A+ AGG GGGVTTWYQS
Subjt:  QAKLAGGSGGGVTTWYQS

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.3e-0839.2Show/hide
Query:  MPRANRSSVRAKVL------------------VQIELPVPDNLP---YSTSLICCTWVELYRMSICVVV--NYVYQVKQSQHV----------LLGGNNV
        MPR NR S++ + L                  V IELPVPD LP    S+     TW+ELY  S+ V +  ++  QV    H+          ++ G++V
Subjt:  MPRANRSSVRAKVL------------------VQIELPVPDNLP---YSTSLICCTWVELYRMSICVVV--NYVYQVKQSQHV----------LLGGNNV

Query:  CWLHAVFQAKLAGGSGGGVTTWYQS
        CWLHAVF+AK  GG GGGVTTW  S
Subjt:  CWLHAVFQAKLAGGSGGGVTTWYQS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1151.65Show/hide
Query:  LVQIELPVPDNLPYSTSLI---CCTWVELYRMSICVVVNY--VYQVKQSQHVLL------GGNNVCWLHAVFQAKLAGGSGGGVTTWYQSR
        LV+IELPVPD LP S         TW+ELY  S+ V + Y  + Q K+ Q  +L       G++VCWLHA+F+AK AGG GGGVTTWYQS+
Subjt:  LVQIELPVPDNLPYSTSLI---CCTWVELYRMSICVVVNY--VYQVKQSQHVLL------GGNNVCWLHAVFQAKLAGGSGGGVTTWYQSR

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.4e-0839.83Show/hide
Query:  ETLFIGVSTLRMPRANRSSVRAKVLVQIELPVPDNLP---YSTSLICCTWVELYRMSICVVV--NYVYQVKQSQHV----------LLGGNNVCWLHAVF
        +T+   +STL + R N +         IELPVPD LP    S+     TW+ELY  S+ V +  ++  QV    H+          ++ G++VCWLHAVF
Subjt:  ETLFIGVSTLRMPRANRSSVRAKVLVQIELPVPDNLP---YSTSLICCTWVELYRMSICVVV--NYVYQVKQSQHV----------LLGGNNVCWLHAVF

Query:  QAKLAGGSGGGVTTWYQS
        +AK  GG GGGVTTW  S
Subjt:  QAKLAGGSGGGVTTWYQS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase6.4e-1251.65Show/hide
Query:  LVQIELPVPDNLPYSTSLI---CCTWVELYRMSICVVVNY--VYQVKQSQHVLL------GGNNVCWLHAVFQAKLAGGSGGGVTTWYQSR
        LV+IELPVPD LP S         TW+ELY  S+ V + Y  + Q K+ Q  +L       G++VCWLHA+F+AK AGG GGGVTTWYQS+
Subjt:  LVQIELPVPDNLPYSTSLI---CCTWVELYRMSICVVVNY--VYQVKQSQHVLL------GGNNVCWLHAVFQAKLAGGSGGGVTTWYQSR

A0A5A7UT17 CCHC-type domain-containing protein1.1e-0839.2Show/hide
Query:  MPRANRSSVRAKVL------------------VQIELPVPDNLP---YSTSLICCTWVELYRMSICVVV--NYVYQVKQSQHV----------LLGGNNV
        MPR NR S++ + L                  V IELPVPD LP    S+     TW+ELY  S+ V +  ++  QV    H+          ++ G++V
Subjt:  MPRANRSSVRAKVL------------------VQIELPVPDNLP---YSTSLICCTWVELYRMSICVVV--NYVYQVKQSQHV----------LLGGNNV

Query:  CWLHAVFQAKLAGGSGGGVTTWYQS
        CWLHAVF+AK  GG GGGVTTW  S
Subjt:  CWLHAVFQAKLAGGSGGGVTTWYQS

A0A5D3BTP3 Reverse transcriptase6.4e-1251.65Show/hide
Query:  LVQIELPVPDNLPYSTSLI---CCTWVELYRMSICVVVNY--VYQVKQSQHVLL------GGNNVCWLHAVFQAKLAGGSGGGVTTWYQSR
        LV+IELPVPD LP S         TW+ELY  S+ V + Y  + Q K+ Q  +L       G++VCWLHA+F+AK AGG GGGVTTWYQS+
Subjt:  LVQIELPVPDNLPYSTSLI---CCTWVELYRMSICVVVNY--VYQVKQSQHVLL------GGNNVCWLHAVFQAKLAGGSGGGVTTWYQSR

A0A5D3CJX3 CCHC-type domain-containing protein6.7e-0939.83Show/hide
Query:  ETLFIGVSTLRMPRANRSSVRAKVLVQIELPVPDNLP---YSTSLICCTWVELYRMSICVVV--NYVYQVKQSQHV----------LLGGNNVCWLHAVF
        +T+   +STL + R N +         IELPVPD LP    S+     TW+ELY  S+ V +  ++  QV    H+          ++ G++VCWLHAVF
Subjt:  ETLFIGVSTLRMPRANRSSVRAKVLVQIELPVPDNLP---YSTSLICCTWVELYRMSICVVV--NYVYQVKQSQHV----------LLGGNNVCWLHAVF

Query:  QAKLAGGSGGGVTTWYQS
        +AK  GG GGGVTTW  S
Subjt:  QAKLAGGSGGGVTTWYQS

A0A5D3CMM1 Reverse transcriptase3.9e-0940.68Show/hide
Query:  ETLFIGVSTLRMPRANRSSVRAKVLVQIELPVPDNL---PYSTSLICCTWVELYRMSI-----CVVVN-------YVYQVKQSQHVLLGGNNVCWLHAVF
        +T+   +STL + R N        +V+I+L VPD L     S+     TW+ELY  S+     C   N        V+ V      ++ G+NVCWLHAVF
Subjt:  ETLFIGVSTLRMPRANRSSVRAKVLVQIELPVPDNL---PYSTSLICCTWVELYRMSI-----CVVVN-------YVYQVKQSQHVLLGGNNVCWLHAVF

Query:  QAKLAGGSGGGVTTWYQS
        +A+ AGG GGGVTTWYQS
Subjt:  QAKLAGGSGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTCTTCGTTGCAGTGGAAACACTTTCCTTTGTCTACAACTTCTTTGACCTTCTTGCCCTTCTACCCCAGAGTCCCCATCCAATAAAATCCACCGAAGGGAGGAC
TAGATTGAAAAACAGACTAAGAAAATCTTTGTTGGGATTTTTTAACCGAAGGGTGGTGTTCGTTCTTGTACGTGAGAAGAGTTCGGGATCGAAGAGATCGAGATTACAGG
AAGAGTTCGTGATTCCTTGTTGTTCTGTCGACAGCGTTGAGACGCTGTTCATCGGCGTCTCAACGCTGCGCATGCCAAGAGCAAATAGGTCAAGTGTACGGGCCAAGGTT
CTAGTACAGATCGAGCTCCCAGTGCCTGATAACCTGCCATACTCCACAAGTTTGATATGTTGTACGTGGGTGGAGTTGTATAGAATGTCCATATGTGTTGTAGTAAATTA
TGTTTATCAGGTAAAGCAGAGTCAGCACGTATTGTTAGGAGGTAACAATGTCTGTTGGCTTCATGCCGTCTTCCAGGCTAAGTTAGCAGGTGGTTCGGGAGGGGGTGTGA
CAACTTGGTATCAGAGCAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTCTTCGTTGCAGTGGAAACACTTTCCTTTGTCTACAACTTCTTTGACCTTCTTGCCCTTCTACCCCAGAGTCCCCATCCAATAAAATCCACCGAAGGGAGGAC
TAGATTGAAAAACAGACTAAGAAAATCTTTGTTGGGATTTTTTAACCGAAGGGTGGTGTTCGTTCTTGTACGTGAGAAGAGTTCGGGATCGAAGAGATCGAGATTACAGG
AAGAGTTCGTGATTCCTTGTTGTTCTGTCGACAGCGTTGAGACGCTGTTCATCGGCGTCTCAACGCTGCGCATGCCAAGAGCAAATAGGTCAAGTGTACGGGCCAAGGTT
CTAGTACAGATCGAGCTCCCAGTGCCTGATAACCTGCCATACTCCACAAGTTTGATATGTTGTACGTGGGTGGAGTTGTATAGAATGTCCATATGTGTTGTAGTAAATTA
TGTTTATCAGGTAAAGCAGAGTCAGCACGTATTGTTAGGAGGTAACAATGTCTGTTGGCTTCATGCCGTCTTCCAGGCTAAGTTAGCAGGTGGTTCGGGAGGGGGTGTGA
CAACTTGGTATCAGAGCAGGTAG
Protein sequenceShow/hide protein sequence
MSVFVAVETLSFVYNFFDLLALLPQSPHPIKSTEGRTRLKNRLRKSLLGFFNRRVVFVLVREKSSGSKRSRLQEEFVIPCCSVDSVETLFIGVSTLRMPRANRSSVRAKV
LVQIELPVPDNLPYSTSLICCTWVELYRMSICVVVNYVYQVKQSQHVLLGGNNVCWLHAVFQAKLAGGSGGGVTTWYQSR