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Tan0022458 (gene) of Snake gourd v1 genome

Gene IDTan0022458
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG10:14904018..14904428
RNA-Seq ExpressionTan0022458
SyntenyTan0022458
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RXH89245.1 hypothetical protein DVH24_031602 [Malus domestica]5.6e-0434.26Show/hide
Query:  FFPLIIESDCLELILALNHPDSDLSELRNIVGDIVEEIAFQAIVRFEKCPRSCNRVAHSLARIPLTHHHTPSSLDLPILSPLENECNFWMGSYPLLVSSI
        F  +++ESDCL+ I  LN   SDLS +  I  D+++  +   +VRF    R CN VAH LA+  L+     SS +L            W    P+LV  +
Subjt:  FFPLIIESDCLELILALNHPDSDLSELRNIVGDIVEEIAFQAIVRFEKCPRSCNRVAHSLARIPLTHHHTPSSLDLPILSPLENECNFWMGSYPLLVSSI

Query:  LNEEVACN
        L +++ CN
Subjt:  LNEEVACN

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]5.1e-0531.58Show/hide
Query:  GLKSLRQIEGSTFFPLIIESDCLELILALNHPDSDLSELRNIVGDIVEEIAFQAIVRFEKCPRSCNRVAHSLARIPLTHHHTPSSLDLPILSPLENECNF
        GL+   QI  S+   LI+ESDC E++  LN+     +E+  I+ D+  E      V+F   PR+CN  AH+LA+  L +  T                + 
Subjt:  GLKSLRQIEGSTFFPLIIESDCLELILALNHPDSDLSELRNIVGDIVEEIAFQAIVRFEKCPRSCNRVAHSLARIPLTHHHTPSSLDLPILSPLENECNF

Query:  WMGSYPLLVSSILN
        W+G++P  V ++LN
Subjt:  WMGSYPLLVSSILN

XP_024164491.1 uncharacterized protein LOC112171562 [Rosa chinensis]5.1e-0539.42Show/hide
Query:  LSGLKSLRQIEGSTFFPLIIESDCLELILALNHPDSDLSELRNIVGDIVEEIAFQAIVRFEKCPRSCNRVAHSLARIPLTHHHTPSSLDLP---ILSPLE
        L+ LK+LR  +       IIESDCL  I  L   D +LSEL N+V DI + I     V+    PRSCN+VAH LA +     H+      P   IL  + 
Subjt:  LSGLKSLRQIEGSTFFPLIIESDCLELILALNHPDSDLSELRNIVGDIVEEIAFQAIVRFEKCPRSCNRVAHSLARIPLTHHHTPSSLDLP---ILSPLE

Query:  NECN
         +CN
Subjt:  NECN

TrEMBL top hitse value%identityAlignment
A0A498J3L0 RNase H domain-containing protein2.7e-0434.26Show/hide
Query:  FFPLIIESDCLELILALNHPDSDLSELRNIVGDIVEEIAFQAIVRFEKCPRSCNRVAHSLARIPLTHHHTPSSLDLPILSPLENECNFWMGSYPLLVSSI
        F  +++ESDCL+ I  LN   SDLS +  I  D+++  +   +VRF    R CN VAH LA+  L+     SS +L            W    P+LV  +
Subjt:  FFPLIIESDCLELILALNHPDSDLSELRNIVGDIVEEIAFQAIVRFEKCPRSCNRVAHSLARIPLTHHHTPSSLDLPILSPLENECNFWMGSYPLLVSSI

Query:  LNEEVACN
        L +++ CN
Subjt:  LNEEVACN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCCCTTGAAGGAGTAGTTGTCCTCTCTGGTTTGAAATCTCTTCGCCAAATTGAGGGATCTACTTTTTTCCCTCTCATCATAGAGTCGGATTGCCTGGAACTTAT
CTTGGCATTGAATCACCCTGATTCAGATCTCTCAGAGCTCAGAAACATTGTGGGAGATATCGTTGAAGAAATCGCCTTTCAGGCGATCGTTCGTTTCGAAAAATGCCCTC
GAAGCTGCAACCGAGTGGCTCACTCTTTGGCCAGAATTCCTCTAACTCACCATCACACTCCTTCTAGTCTCGATCTCCCGATCCTTTCGCCCCTGGAAAATGAATGTAAT
TTTTGGATGGGTTCCTACCCGCTTTTGGTCTCCTCCATTCTTAATGAGGAGGTTGCATGTAATTTGGTTGGTGAAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCCCTTGAAGGAGTAGTTGTCCTCTCTGGTTTGAAATCTCTTCGCCAAATTGAGGGATCTACTTTTTTCCCTCTCATCATAGAGTCGGATTGCCTGGAACTTAT
CTTGGCATTGAATCACCCTGATTCAGATCTCTCAGAGCTCAGAAACATTGTGGGAGATATCGTTGAAGAAATCGCCTTTCAGGCGATCGTTCGTTTCGAAAAATGCCCTC
GAAGCTGCAACCGAGTGGCTCACTCTTTGGCCAGAATTCCTCTAACTCACCATCACACTCCTTCTAGTCTCGATCTCCCGATCCTTTCGCCCCTGGAAAATGAATGTAAT
TTTTGGATGGGTTCCTACCCGCTTTTGGTCTCCTCCATTCTTAATGAGGAGGTTGCATGTAATTTGGTTGGTGAAAGTTAG
Protein sequenceShow/hide protein sequence
MKALEGVVVLSGLKSLRQIEGSTFFPLIIESDCLELILALNHPDSDLSELRNIVGDIVEEIAFQAIVRFEKCPRSCNRVAHSLARIPLTHHHTPSSLDLPILSPLENECN
FWMGSYPLLVSSILNEEVACNLVGES