CuGenDBv2

Gene ID	Tan0022490
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG10:25792676..25793407
RNA-Seq Expression	Tan0022490
Synteny	Tan0022490
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

2.0e-60

53.14

Show/hide

Query:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN
        M+S+ +++L A KL G N  +W++ +N +L+  DL+FVL E+CPQVPA NA++ V + Y+RW  ANE A+A+ILAS+ +VLA++ E  ++AR IMD +  
Subjt:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN

Query:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR
        +  Q S +I+H+ALK++YNARM EG SVREHVLN++ HFN+AE+NGAVIDE  QV FILESL +SFLQFRSNA +N I Y LT+LLNELQ ++ LM  K 
Subjt:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR

Query:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR
        Q+ GEAN+   +    + S+SGTK+   +S +KK +KK+
Subjt:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

2.0e-60

53.14

Show/hide

Query:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN
        M+S+ +++L A KL G N  +W++ +N +L+  DL+FVL E+CPQVPA NA++ V + Y+RW  ANE A+A+ILAS+ +VLA++ E  ++AR IMD +  
Subjt:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN

Query:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR
        +  Q S +I+H+ALK++YNARM EG SVREHVLN++ HFN+AE+NGAVIDE  QV FILESL +SFLQFRSNA +N I Y LT+LLNELQ ++ LM  K 
Subjt:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR

Query:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR
        Q+ GEAN+   +    + S+SGTK+   +S +KK +KK+
Subjt:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

2.0e-60

53.14

Show/hide

Query:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN
        M+S+ +++L A KL G N  +W++ +N +L+  DL+FVL E+CPQVPA NA++ V + Y+RW  ANE A+A+ILAS+ +VLA++ E  ++AR IMD +  
Subjt:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN

Query:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR
        +  Q S +I+H+ALK++YNARM EG SVREHVLN++ HFN+AE+NGAVIDE  QV FILESL +SFLQFRSNA +N I Y LT+LLNELQ ++ LM  K 
Subjt:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR

Query:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR
        Q+ GEAN+   +    + S+SGTK+   +S +KK +KK+
Subjt:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

8.9e-61

53.56

Show/hide

Query:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN
        M+S+ +++L A KL G N   W++ +N +L+  DL+FVL E+CPQVPA NA+Q V + Y+RW  ANE A+A+ILAS+ +VLA++ E  ++AR IMD +  
Subjt:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN

Query:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR
        +  Q S +I+H+ALK++YNARM EG SVREHVLN++ HFN+AE+NGAVIDE  QV FILESL +SFLQFRSNA +N I Y LT+LLNELQ ++ LM  K 
Subjt:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR

Query:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR
        Q+ GEAN+   +    + S+SGTK+   +S +KK +KK+
Subjt:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

2.0e-60

53.14

Show/hide

Query:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN
        M+S+ +++L A KL G N  +W++ +N +L+  DL+FVL E+CPQVPA NA++ V + Y+RW  ANE A+A+ILAS+ +VLA++ E  ++AR IMD +  
Subjt:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN

Query:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR
        +  Q S +I+H+ALK++YNARM EG SVREHVLN++ HFN+AE+NGAVIDE  QV FILESL +SFLQFRSNA +N I Y LT+LLNELQ ++ LM  K 
Subjt:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR

Query:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR
        Q+ GEAN+   +    + S+SGTK+   +S +KK +KK+
Subjt:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

9.6e-61

53.14

Show/hide

Query:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN
        M+S+ +++L A KL G N  +W++ +N +L+  DL+FVL E+CPQVPA NA++ V + Y+RW  ANE A+A+ILAS+ +VLA++ E  ++AR IMD +  
Subjt:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN

Query:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR
        +  Q S +I+H+ALK++YNARM EG SVREHVLN++ HFN+AE+NGAVIDE  QV FILESL +SFLQFRSNA +N I Y LT+LLNELQ ++ LM  K 
Subjt:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR

Query:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR
        Q+ GEAN+   +    + S+SGTK+   +S +KK +KK+
Subjt:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR

A0A5A7TU93 Gag/pol protein

9.6e-61

53.14

Show/hide

Query:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN
        M+S+ +++L A KL G N  +W++ +N +L+  DL+FVL E+CPQVPA NA++ V + Y+RW  ANE A+A+ILAS+ +VLA++ E  ++AR IMD +  
Subjt:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN

Query:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR
        +  Q S +I+H+ALK++YNARM EG SVREHVLN++ HFN+AE+NGAVIDE  QV FILESL +SFLQFRSNA +N I Y LT+LLNELQ ++ LM  K 
Subjt:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR

Query:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR
        Q+ GEAN+   +    + S+SGTK+   +S +KK +KK+
Subjt:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR

A0A5A7TWB9 Gag/pol protein

9.6e-61

53.14

Show/hide

Query:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN
        M+S+ +++L A KL G N  +W++ +N +L+  DL+FVL E+CPQVPA NA++ V + Y+RW  ANE A+A+ILAS+ +VLA++ E  ++AR IMD +  
Subjt:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN

Query:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR
        +  Q S +I+H+ALK++YNARM EG SVREHVLN++ HFN+AE+NGAVIDE  QV FILESL +SFLQFRSNA +N I Y LT+LLNELQ ++ LM  K 
Subjt:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR

Query:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR
        Q+ GEAN+   +    + S+SGTK+   +S +KK +KK+
Subjt:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR

A0A5A7V6N0 Gag/pol protein

4.3e-61

53.56

Show/hide

Query:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN
        M+S+ +++L A KL G N   W++ +N +L+  DL+FVL E+CPQVPA NA+Q V + Y+RW  ANE A+A+ILAS+ +VLA++ E  ++AR IMD +  
Subjt:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN

Query:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR
        +  Q S +I+H+ALK++YNARM EG SVREHVLN++ HFN+AE+NGAVIDE  QV FILESL +SFLQFRSNA +N I Y LT+LLNELQ ++ LM  K 
Subjt:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR

Query:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR
        Q+ GEAN+   +    + S+SGTK+   +S +KK +KK+
Subjt:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR

A0A5D3CPJ6 Gag/pol protein

9.6e-61

53.14

Show/hide

Query:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN
        M+S+ +++L A KL G N  +W++ +N +L+  DL+FVL E+CPQVPA NA++ V + Y+RW  ANE A+A+ILAS+ +VLA++ E  ++AR IMD +  
Subjt:  MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLN

Query:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR
        +  Q S +I+H+ALK++YNARM EG SVREHVLN++ HFN+AE+NGAVIDE  QV FILESL +SFLQFRSNA +N I Y LT+LLNELQ ++ LM  K 
Subjt:  LSRQPSKKIRHEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKR

Query:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR
        Q+ GEAN+   +    + S+SGTK+   +S +KK +KK+
Subjt:  QQNGEANLFAHSNSSQKDSSSGTKNCSQTSEHKKIQKKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTAGCTCTATTATTTCCTTATTGGGTGCGAAAAAGTTAACCGGAGAGAACATACTGACTTGGAGGGATGGACTCAACATAATCTTGGTTACACATGATCTTAAGTT
CGTTCTCAATGAAAAGTGTCCTCAAGTTCCTGCTCAAAACGCATCTCAAGCTGTTGAAGATGCGTATGACCGCTGGATCAATGCCAACGAAAATGCAAAAGCCTTTATCC
TAGCTAGCATACCTGATGTTTTAGCCAGGAGGCTGGAGGGCAAGGTCTCAGCTCGTGTGATCATGGATTTTGTGCTAAATTTGTCTAGACAACCGTCCAAAAAAATTCGG
CATGAAGCCCTAAAATTCGTTTACAACGCACGCATGAAGGAAGGAACGTCAGTGAGAGAACATGTTCTCAATCTGATTGCCCACTTCAACATAGCGGAATTAAACGGAGC
GGTCATAGATGAGAAATGTCAGGTTTTGTTCATCCTAGAATCTCTTTCGAAGAGTTTTCTGCAATTCCGTAGCAATGCAGCGATAAATTACATAGAGTATGATCTGACTT
CTCTGCTAAATGAGCTGCAGAATTATCAGTTTCTTATGGATGATAAGAGACAACAAAATGGAGAGGCAAATTTATTTGCCCATTCCAATAGTTCTCAGAAGGATTCATCC
TCTGGGACTAAGAACTGCAGCCAGACTTCTGAACATAAGAAGATACAGAAGAAGAGGAAAATGAGCATATAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSSSIISLLGAKKLTGENILTWRDGLNIILVTHDLKFVLNEKCPQVPAQNASQAVEDAYDRWINANENAKAFILASIPDVLARRLEGKVSARVIMDFVLNLSRQPSKKIR
HEALKFVYNARMKEGTSVREHVLNLIAHFNIAELNGAVIDEKCQVLFILESLSKSFLQFRSNAAINYIEYDLTSLLNELQNYQFLMDDKRQQNGEANLFAHSNSSQKDSS
SGTKNCSQTSEHKKIQKKRKMSI

Tan0022490 (gene) of Snake gourd v1 genome