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Tan0022533 (gene) of Snake gourd v1 genome

Gene IDTan0022533
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG03:1780797..1813863
RNA-Seq ExpressionTan0022533
SyntenyTan0022533
Gene Ontology termsGO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.5e-0840.35Show/hide
Query:  MTETLSPRLYGTVCTQVEIELLVPDNLHENEIP-----NGFVRIYLE-------------------ICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSS
        MTE LS RLYGTVCTQV+IEL +PD L  +        N ++ +Y E                   +  +    STGIVR  +DVCWLHAV R K A   
Subjt:  MTETLSPRLYGTVCTQVEIELLVPDNLHENEIP-----NGFVRIYLE-------------------ICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSS

Query:  GGGVTSWVKLPFYP
        G  VT+W +    P
Subjt:  GGGVTSWVKLPFYP

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-0948.04Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELLVPDNL---HENEIPNG--FVRIYLEICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGG
        MTE LSPRLYGTVCTQ                 VEIEL VPD L    E+   N   ++ +Y+E          GIVRE +DVCWLHAV RAK A   GG
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELLVPDNL---HENEIPNG--FVRIYLEICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGG

Query:  GV
        GV
Subjt:  GV

TYK06355.1 uncharacterized protein E5676_scaffold163G00340 [Cucumis melo var. makuwa]6.5e-0947Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELLVPDNLHENEIPNGFVRIYLEICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGGGVTSW
        MTE LS  LYGTVCTQ                 VEIEL VPD L  +++PN       +  + G   S GIVRE N VCWL AV RAK     GGGVT+W
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELLVPDNLHENEIPNGFVRIYLEICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGGGVTSW

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]4.1e-1146.46Show/hide
Query:  MTETLSPRLYGTVCTQVEIELLVPDNLHENEIPNGFVRIYLEIC---------LSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGGGVTSWVKLPFYP
        MTE LS RLYGTVCTQV         LH+N+     V I L +              +RS GIVR  +DVCWLH+V RAK AS  GGGVT+W +    P
Subjt:  MTETLSPRLYGTVCTQVEIELLVPDNLHENEIPNGFVRIYLEIC---------LSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGGGVTSWVKLPFYP

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-0948.04Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELLVPDNL---HENEIPNG--FVRIYLEICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGG
        MTE LSPRLYGTVCTQ                 VEIEL VPD L    E+   N   ++ +Y+E          GIVRE +DVCWLHAV RAK A   GG
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELLVPDNL---HENEIPNG--FVRIYLEICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGG

Query:  GV
        GV
Subjt:  GV

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein7.0e-0940.35Show/hide
Query:  MTETLSPRLYGTVCTQVEIELLVPDNLHENEIP-----NGFVRIYLE-------------------ICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSS
        MTE LS RLYGTVCTQV+IEL +PD L  +        N ++ +Y E                   +  +    STGIVR  +DVCWLHAV R K A   
Subjt:  MTETLSPRLYGTVCTQVEIELLVPDNLHENEIP-----NGFVRIYLE-------------------ICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSS

Query:  GGGVTSWVKLPFYP
        G  VT+W +    P
Subjt:  GGGVTSWVKLPFYP

A0A5A7VMG9 Reverse transcriptase6.4e-1048.04Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELLVPDNL---HENEIPNG--FVRIYLEICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGG
        MTE LSPRLYGTVCTQ                 VEIEL VPD L    E+   N   ++ +Y+E          GIVRE +DVCWLHAV RAK A   GG
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELLVPDNL---HENEIPNG--FVRIYLEICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGG

Query:  GV
        GV
Subjt:  GV

A0A5D3C4P7 Retrotrans_gag domain-containing protein3.2e-0947Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELLVPDNLHENEIPNGFVRIYLEICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGGGVTSW
        MTE LS  LYGTVCTQ                 VEIEL VPD L  +++PN       +  + G   S GIVRE N VCWL AV RAK     GGGVT+W
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELLVPDNLHENEIPNGFVRIYLEICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGGGVTSW

A0A5D3CU23 Retrotrans_gag domain-containing protein2.0e-1146.46Show/hide
Query:  MTETLSPRLYGTVCTQVEIELLVPDNLHENEIPNGFVRIYLEIC---------LSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGGGVTSWVKLPFYP
        MTE LS RLYGTVCTQV         LH+N+     V I L +              +RS GIVR  +DVCWLH+V RAK AS  GGGVT+W +    P
Subjt:  MTETLSPRLYGTVCTQVEIELLVPDNLHENEIPNGFVRIYLEIC---------LSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGGGVTSWVKLPFYP

A0A5D3DX39 Reverse transcriptase6.4e-1048.04Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELLVPDNL---HENEIPNG--FVRIYLEICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGG
        MTE LSPRLYGTVCTQ                 VEIEL VPD L    E+   N   ++ +Y+E          GIVRE +DVCWLHAV RAK A   GG
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELLVPDNL---HENEIPNG--FVRIYLEICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGG

Query:  GV
        GV
Subjt:  GV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCTGGTGCCTGATAACCTACATGAAAATGAGATTCCCAACGGATTTGT
TCGAATTTACCTCGAAATATGCTTATCAGGTAAAACAAGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTGTCGGGCTAAGTTAGCTA
GTAGTTCGGGAGGGGGTGTGACAAGCTGGGTCAAATTACCGTTTTACCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCTGGTGCCTGATAACCTACATGAAAATGAGATTCCCAACGGATTTGT
TCGAATTTACCTCGAAATATGCTTATCAGGTAAAACAAGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTGTCGGGCTAAGTTAGCTA
GTAGTTCGGGAGGGGGTGTGACAAGCTGGGTCAAATTACCGTTTTACCCTTAG
Protein sequenceShow/hide protein sequence
MTETLSPRLYGTVCTQVEIELLVPDNLHENEIPNGFVRIYLEICLSGKTRSTGIVREVNDVCWLHAVCRAKLASSSGGGVTSWVKLPFYP