; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0022536 (gene) of Snake gourd v1 genome

Gene IDTan0022536
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG05:15884451..15886828
RNA-Seq ExpressionTan0022536
SyntenyTan0022536
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]5.5e-0456.36Show/hide
Query:  VEIELPVPDILPYIVCLSGITG-STGIDREVNNVCWLHAVFRAKLVGSLGWGVTS
        VEIELPV D LP     SG    S GI RE ++VCWLH VFR K  G  G GVT+
Subjt:  VEIELPVPDILPYIVCLSGITG-STGIDREVNNVCWLHAVFRAKLVGSLGWGVTS

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.5e-0459.26Show/hide
Query:  VEIELPVPDILPYIV-CLSGITGSTGIDREVNNVCWLHAVFRAKLVGSLGWGVT
        VEIELPVPD LP         + STGI R  ++VCWLHAVFRAK  G  G GVT
Subjt:  VEIELPVPDILPYIV-CLSGITGSTGIDREVNNVCWLHAVFRAKLVGSLGWGVT

KAA0066738.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.5e-0451.52Show/hide
Query:  VEIELPVPDILPYI------------VCLSGITGSTGIDREVNNVCWLHAVFRAKLVGSLGWGVTS
        VEIELP PD LP +            VC     GS GI R  ++VCWLHAVFRAK  G LG GVT+
Subjt:  VEIELPVPDILPYI------------VCLSGITGSTGIDREVNNVCWLHAVFRAKLVGSLGWGVTS

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]2.5e-0457.41Show/hide
Query:  EIELPVPDILPYIVCLSGITG-STGIDREVNNVCWLHAVFRAKLVGSLGWGVTS
        EIELPVPD L      SG    S GI R  ++VCWLHA+FRAK+VG  G GVT+
Subjt:  EIELPVPDILPYIVCLSGITG-STGIDREVNNVCWLHAVFRAKLVGSLGWGVTS

TYK06355.1 uncharacterized protein E5676_scaffold163G00340 [Cucumis melo var. makuwa]1.0e-0560.71Show/hide
Query:  VEIELPVPDILP--YIVCLSGITGSTGIDREVNNVCWLHAVFRAKLVGSLGWGVTS
        VEIELPVPD LP   +   + I GS GI RE +NVCWL AVFRAK  G  G GVT+
Subjt:  VEIELPVPDILP--YIVCLSGITGSTGIDREVNNVCWLHAVFRAKLVGSLGWGVTS

TrEMBL top hitse value%identityAlignment
A0A5D3BAD1 Retrotrans_gag domain-containing protein7.1e-0559.26Show/hide
Query:  VEIELPVPDILPYIV-CLSGITGSTGIDREVNNVCWLHAVFRAKLVGSLGWGVT
        VEIELPVPD LP         + STGI R  ++VCWLHAVFRAK  G  G GVT
Subjt:  VEIELPVPDILPYIV-CLSGITGSTGIDREVNNVCWLHAVFRAKLVGSLGWGVT

A0A5D3BNX1 Zf-CCHC domain-containing protein1.2e-0457.41Show/hide
Query:  EIELPVPDILPYIVCLSGITG-STGIDREVNNVCWLHAVFRAKLVGSLGWGVTS
        EIELPVPD L      SG    S GI R  ++VCWLHA+FRAK+VG  G GVT+
Subjt:  EIELPVPDILPYIVCLSGITG-STGIDREVNNVCWLHAVFRAKLVGSLGWGVTS

A0A5D3BSA6 Retrotrans_gag domain-containing protein2.7e-0456.36Show/hide
Query:  VEIELPVPDILPYIVCLSGITG-STGIDREVNNVCWLHAVFRAKLVGSLGWGVTS
        VEIELPV D LP     SG    S GI RE ++VCWLH VFR K  G  G GVT+
Subjt:  VEIELPVPDILPYIVCLSGITG-STGIDREVNNVCWLHAVFRAKLVGSLGWGVTS

A0A5D3C4P7 Retrotrans_gag domain-containing protein4.9e-0660.71Show/hide
Query:  VEIELPVPDILP--YIVCLSGITGSTGIDREVNNVCWLHAVFRAKLVGSLGWGVTS
        VEIELPVPD LP   +   + I GS GI RE +NVCWL AVFRAK  G  G GVT+
Subjt:  VEIELPVPDILP--YIVCLSGITGSTGIDREVNNVCWLHAVFRAKLVGSLGWGVTS

A0A5D3DVW9 DNA/RNA polymerases superfamily protein2.7e-0451.52Show/hide
Query:  VEIELPVPDILPYI------------VCLSGITGSTGIDREVNNVCWLHAVFRAKLVGSLGWGVTS
        VEIELP PD LP +            VC     GS GI R  ++VCWLHAVFRAK  G LG GVT+
Subjt:  VEIELPVPDILPYI------------VCLSGITGSTGIDREVNNVCWLHAVFRAKLVGSLGWGVTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAACCATAAATCGCGTAGTAAATTAGTACTAAATGAAGCTACACATGAACCAACAAGAGTAGAGATCGAGCTCCCCGTGCCTGATATCCTGCCATATATAGTATG
TTTATCAGGTATAACAGGGTCAACAGGTATCGATAGAGAGGTAAACAATGTTTGTTGGCTCCACGCCGTCTTCCGAGCTAAGTTAGTGGGTAGTTTAGGATGGGGTGTGA
CATCTCCGTTGTATCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAACCATAAATCGCGTAGTAAATTAGTACTAAATGAAGCTACACATGAACCAACAAGAGTAGAGATCGAGCTCCCCGTGCCTGATATCCTGCCATATATAGTATG
TTTATCAGGTATAACAGGGTCAACAGGTATCGATAGAGAGGTAAACAATGTTTGTTGGCTCCACGCCGTCTTCCGAGCTAAGTTAGTGGGTAGTTTAGGATGGGGTGTGA
CATCTCCGTTGTATCTCTAG
Protein sequenceShow/hide protein sequence
MRNHKSRSKLVLNEATHEPTRVEIELPVPDILPYIVCLSGITGSTGIDREVNNVCWLHAVFRAKLVGSLGWGVTSPLYL