; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0022606 (gene) of Snake gourd v1 genome

Gene IDTan0022606
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionProtein-serine/threonine phosphatase
Genome locationLG05:85926129..85926658
RNA-Seq ExpressionTan0022606
SyntenyTan0022606
Gene Ontology termsGO:0006369 - termination of RNA polymerase II transcription (biological process)
GO:0006378 - mRNA polyadenylation (biological process)
GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex (cellular component)
GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
InterPro domainsIPR006811 - RNA polymerase II subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137380.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus]4.0e-6299.17Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVITFEEKVFDMVIE
        DGSFDVV TFEEKVFDMVIE
Subjt:  DGSFDVVITFEEKVFDMVIE

XP_008446784.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo]4.0e-6299.17Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVITFEEKVFDMVIE
        DGSFDVV TFEEKVFDMVIE
Subjt:  DGSFDVVITFEEKVFDMVIE

XP_022997876.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima]2.0e-6198.33Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVITFEEKVFDMVIE
        DG FDVV TFEEKVFDMVIE
Subjt:  DGSFDVVITFEEKVFDMVIE

XP_038895501.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X1 [Benincasa hispida]8.9e-6298.33Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVITFEEKVFDMVIE
        DGSFDVV TFEEKVFDMVIE
Subjt:  DGSFDVVITFEEKVFDMVIE

XP_038895502.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X2 [Benincasa hispida]8.9e-6298.33Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVITFEEKVFDMVIE
        DGSFDVV TFEEKVFDMVIE
Subjt:  DGSFDVVITFEEKVFDMVIE

TrEMBL top hitse value%identityAlignment
A0A0A0LQ65 Protein-serine/threonine phosphatase3.9e-6399.17Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVITFEEKVFDMVIEG
        DGSFDVV TFEEKVFDMVIEG
Subjt:  DGSFDVVITFEEKVFDMVIEG

A0A1S3BFX9 Protein-serine/threonine phosphatase1.9e-6299.17Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVITFEEKVFDMVIE
        DGSFDVV TFEEKVFDMVIE
Subjt:  DGSFDVVITFEEKVFDMVIE

A0A6J1C6C8 Protein-serine/threonine phosphatase1.6e-6197.5Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNA VKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVITFEEKVFDMVIE
        DGSFDVV +FEEKVFDMVIE
Subjt:  DGSFDVVITFEEKVFDMVIE

A0A6J1G9U0 Protein-serine/threonine phosphatase9.6e-6298.33Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVITFEEKVFDMVIE
        DG FDVV TFEEKVFDMVIE
Subjt:  DGSFDVVITFEEKVFDMVIE

A0A6J1K8Q5 Protein-serine/threonine phosphatase9.6e-6298.33Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVITFEEKVFDMVIE
        DG FDVV TFEEKVFDMVIE
Subjt:  DGSFDVVITFEEKVFDMVIE

SwissProt top hitse value%identityAlignment
Q17QI2 RNA polymerase II subunit A C-terminal domain phosphatase SSU728.2e-3460.68Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVITFEEKVFDMVIE
        FD+++T EE+V+D V+E
Subjt:  FDVVITFEEKVFDMVIE

Q5ZJQ7 RNA polymerase II subunit A C-terminal domain phosphatase SSU728.2e-3460.68Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVITFEEKVFDMVIE
        FD+++T EE+V+D V+E
Subjt:  FDVVITFEEKVFDMVIE

Q6PC19 RNA polymerase II subunit A C-terminal domain phosphatase SSU722.8e-3459.83Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PN+YDF T Y+ M++DL RKD ELY +NGIL ML RN  +K+ P+R+Q  +    
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVITFEEKVFDMVIE
        FD+VIT EE+V+D V+E
Subjt:  FDVVITFEEKVFDMVIE

Q9CY97 RNA polymerase II subunit A C-terminal domain phosphatase SSU726.3e-3460.68Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVITFEEKVFDMVIE
        FD+++T EE+V+D V+E
Subjt:  FDVVITFEEKVFDMVIE

Q9NP77 RNA polymerase II subunit A C-terminal domain phosphatase SSU728.2e-3460.68Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGS

Query:  FDVVITFEEKVFDMVIE
        FD+++T EE+V+D V+E
Subjt:  FDVVITFEEKVFDMVIE

Arabidopsis top hitse value%identityAlignment
AT1G73820.1 Ssu72-like family protein1.3e-5581.67Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA
        M++RYAMVCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK MFD+LRRKDPELYKRNGIL M+KRN +VK APQRWQDNA 
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAA

Query:  DGSFDVVITFEEKVFDMVIE
        DG FDVV+TFEEKVFD V+E
Subjt:  DGSFDVVITFEEKVFDMVIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTATCGCTATGCAATGGTTTGCTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGAGC
CCACGTGAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTTGATGATCTCCGTCGAAAAGATCCAGAACTATACA
AGCGTAACGGCATTCTGCCCATGCTTAAAAGAAACGCAGCAGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGACGTGGTAATTACTTTC
GAAGAAAAGGTCTTTGATATGGTTATTGAAGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGTATCGCTATGCAATGGTTTGCTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGAGC
CCACGTGAAGCTTCCTGGACCTTCTCTCCGAGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTTGATGATCTCCGTCGAAAAGATCCAGAACTATACA
AGCGTAACGGCATTCTGCCCATGCTTAAAAGAAACGCAGCAGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGACGTGGTAATTACTTTC
GAAGAAAAGGTCTTTGATATGGTTATTGAAGGTTAG
Protein sequenceShow/hide protein sequence
MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVITF
EEKVFDMVIEG