CuGenDBv2

Gene ID	Tan0022621
Organism	Trichosanthes anguina (Snake gourd v1)
Description	photosystem II repair protein PSB27-H1, chloroplastic-like
Genome location	LG02:2091074..2091910
RNA-Seq Expression	Tan0022621
Synteny	Tan0022621
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0071484 - cellular response to light intensity (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589210.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

3.5e-72

88.1

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Query:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAELR
        MAS +L+TPC+SKSQPLIIP KPKS+ISAAA HH RRRE LSLTASVLAAPWVL PPAPA AS+DEEYVKDTNEVI+KVRTTI MDKNDPNVA AVAELR
Subjt:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAELR

Query:  ESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  ESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022930794.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

1.4e-73

89.29

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Query:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAELR
        MAS +L+TPC+SKSQPLIIP KPKS+ISAAA HHPRRRE LSLTASVLAAPWVL PPAPA AS+DEEYVKDTNEVISKVRTTI MDKNDPNVA AVAELR
Subjt:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAELR

Query:  ESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  ESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022952622.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

1.3e-71

87.79

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Query:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-----HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAV
        MAS +LITP +SKSQPLIIPLKPKSSISAAA     H+ RRREFLSLTASVLA  WVLFPPAPALAS DEEYVKDT EVI KVRTTI MDKNDPNVA AV
Subjt:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-----HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAV

Query:  AELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AELRESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022988975.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima]

4.8e-74

89.88

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Query:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAELR
        MAS +L+TPC+SKSQPLIIP KPKS+ISAAA HHPRRRE LSLTASVLAAPWVL PPAPA AS+DEEYVKDTNEVISKVRTTI MDKNDPNVA AVAELR
Subjt:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAELR

Query:  ESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Subjt:  ESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_023529218.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.1e-73

89.29

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Query:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAELR
        MAS +L+TPC+SKSQPLIIP KPKS+ISAAA HHPRRRE LSLTASVLAAPWVL PPAPA AS+DEEYVKDTNEVI+KVRTTI MDKNDPNVA AVAELR
Subjt:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAELR

Query:  ESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Subjt:  ESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1S2 Uncharacterized protein

8.6e-69

85.21

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Query:  MASASLITPCSSKSQPLIIPLKPKSSISAAAHHP--RRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAEL
        MAS +LITPC+SKSQ   IPLKPKS+ISAA   P  RRREFLSLTASVLA  +VLFP +PALA+ D+EYVKDTNEVI KVRTTI MD+NDPNVA AVA+L
Subjt:  MASASLITPCSSKSQPLIIPLKPKSSISAAAHHP--RRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAEL

Query:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1ESI1 photosystem II repair protein PSB27-H1, chloroplastic-like

6.8e-74

89.29

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Query:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAELR
        MAS +L+TPC+SKSQPLIIP KPKS+ISAAA HHPRRRE LSLTASVLAAPWVL PPAPA AS+DEEYVKDTNEVISKVRTTI MDKNDPNVA AVAELR
Subjt:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAELR

Query:  ESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  ESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1GKW7 photosystem II repair protein PSB27-H1, chloroplastic-like

6.4e-72

87.79

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Query:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-----HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAV
        MAS +LITP +SKSQPLIIPLKPKSSISAAA     H+ RRREFLSLTASVLA  WVLFPPAPALAS DEEYVKDT EVI KVRTTI MDKNDPNVA AV
Subjt:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-----HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAV

Query:  AELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AELRESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1HZH1 photosystem II repair protein PSB27-H1, chloroplastic-like

6.4e-72

87.79

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Query:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-----HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAV
        MAS +LITP +SKSQPLIIPLKPKSSISAAA     H+ RRREFLSLTASVLA  WVLFPPAPALAS DEEYVKDT EVI KVRTTI MDKNDPNVA AV
Subjt:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-----HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAV

Query:  AELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AELRESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1JL33 photosystem II repair protein PSB27-H1, chloroplastic-like

2.3e-74

89.88

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Query:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAELR
        MAS +L+TPC+SKSQPLIIP KPKS+ISAAA HHPRRRE LSLTASVLAAPWVL PPAPA AS+DEEYVKDTNEVISKVRTTI MDKNDPNVA AVAELR
Subjt:  MASASLITPCSSKSQPLIIPLKPKSSISAAA-HHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAELR

Query:  ESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Subjt:  ESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

SwissProt top hits

e value

%identity

Alignment

Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic

1.1e-49

64.74

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Query:  ASASLITPCSSKSQPLIIPLKPKSSISAAAHHPR-----RREFLSL--TASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVA
        A+A+L+ P     +P II     SS+S     PR     RR+FLSL  T+++L        PAP  A++DEEY+KDT+ VISKVR+T++M K DPNVA A
Subjt:  ASASLITPCSSKSQPLIIPLKPKSSISAAAHHPR-----RREFLSL--TASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVA

Query:  VAELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        VAELRE+SN WVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  VAELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

2.9e-05

26.23

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Query:  VLAAPWVLFPPAPALASDDE---EYVKDTNEVISKVRTTINMD-KNDPNVAVAVAELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT
        V+ A   LF P     S  E    Y+K   EV+  +R ++  + K++     +    +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+
Subjt:  VLAAPWVLFPPAPALASDDE---EYVKDTNEVISKVRTTINMD-KNDPNVAVAVAELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT

Query:  APIPAKRKARILEEMDTAEKAL
        AP+P + K  IL++++ AE+ L
Subjt:  APIPAKRKARILEEMDTAEKAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

8.0e-51

64.74

Show/hide

Query:  ASASLITPCSSKSQPLIIPLKPKSSISAAAHHPR-----RREFLSL--TASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVA
        A+A+L+ P     +P II     SS+S     PR     RR+FLSL  T+++L        PAP  A++DEEY+KDT+ VISKVR+T++M K DPNVA A
Subjt:  ASASLITPCSSKSQPLIIPLKPKSSISAAAHHPR-----RREFLSL--TASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVA

Query:  VAELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        VAELRE+SN WVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  VAELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

AT1G05385.1 photosystem II 11 kDa protein-related

2.1e-06

26.23

Show/hide

Query:  VLAAPWVLFPPAPALASDDE---EYVKDTNEVISKVRTTINMD-KNDPNVAVAVAELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT
        V+ A   LF P     S  E    Y+K   EV+  +R ++  + K++     +    +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+
Subjt:  VLAAPWVLFPPAPALASDDE---EYVKDTNEVISKVRTTINMD-KNDPNVAVAVAELRESSNFWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT

Query:  APIPAKRKARILEEMDTAEKAL
        AP+P + K  IL++++ AE+ L
Subjt:  APIPAKRKARILEEMDTAEKAL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCTCTGCATCACTGATAACTCCCTGTTCTTCCAAATCTCAGCCTCTCATCATCCCTCTCAAACCCAAATCCAGCATTTCTGCCGCCGCCCATCACCCGCGCCGCCG
CGAGTTCCTGTCGCTAACCGCCTCTGTTCTGGCGGCGCCGTGGGTTCTGTTCCCTCCGGCGCCGGCTCTGGCCTCGGACGACGAGGAGTACGTGAAGGACACAAACGAGG
TAATAAGCAAGGTTAGAACGACGATCAACATGGACAAAAACGACCCGAATGTGGCGGTGGCGGTGGCGGAGCTTCGAGAAAGTTCAAATTTTTGGGTGGCGAAGTACAGG
AAGGAGAAGGCTTTGTTGGGGCGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTTTCGGGGCATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCGAA
GAGGAAGGCCAGGATTTTGGAAGAGATGGACACGGCGGAGAAGGCTCTGTTAAGAGGGAGATGA

mRNA sequence

Show/hide mRNA sequence

TAAGTACACGTGGCAAACACCCAATTCCCCAAATTCCTCACTAAAATTCACACTATTTTTTTTTTTTCCAATTCCCCTTCTCCTCTCCAATTGCCCCAAAATCATGGCCT
CTGCATCACTGATAACTCCCTGTTCTTCCAAATCTCAGCCTCTCATCATCCCTCTCAAACCCAAATCCAGCATTTCTGCCGCCGCCCATCACCCGCGCCGCCGCGAGTTC
CTGTCGCTAACCGCCTCTGTTCTGGCGGCGCCGTGGGTTCTGTTCCCTCCGGCGCCGGCTCTGGCCTCGGACGACGAGGAGTACGTGAAGGACACAAACGAGGTAATAAG
CAAGGTTAGAACGACGATCAACATGGACAAAAACGACCCGAATGTGGCGGTGGCGGTGGCGGAGCTTCGAGAAAGTTCAAATTTTTGGGTGGCGAAGTACAGGAAGGAGA
AGGCTTTGTTGGGGCGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTTTCGGGGCATTACATTAGCTTTGGGCCGACGGCGCCGATTCCGGCGAAGAGGAAG
GCCAGGATTTTGGAAGAGATGGACACGGCGGAGAAGGCTCTGTTAAGAGGGAGATGAAAATTATGTGAGGGATTTTTAATTAAATCCTAATTAAGTACATTATTCTTTTC
CTGATTTTCTATCTGTATTTTCCTTTTTTTTTTTTTTGGTCTGTTGGAGTTTGATGTTTATGGGTTATGTTAGTATAGGATATGGAGGTTCACAATTTGCGAATTTACGA
GAGGGGAATATTCTAAAATTCGGTGATAAATGCTTTGAGATTAATACATTATTAGACTTTCTCCTAA

Protein sequence

Show/hide protein sequence

MASASLITPCSSKSQPLIIPLKPKSSISAAAHHPRRREFLSLTASVLAAPWVLFPPAPALASDDEEYVKDTNEVISKVRTTINMDKNDPNVAVAVAELRESSNFWVAKYR
KEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Tan0022621 (gene) of Snake gourd v1 genome