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Tan0022729 (gene) of Snake gourd v1 genome

Gene IDTan0022729
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionVQ motif-containing protein 8
Genome locationLG04:7200781..7201529
RNA-Seq ExpressionTan0022729
SyntenyTan0022729
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0070545 - PeBoW complex (cellular component)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25
IPR039833 - VQ motif-containing protein 8, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDP00632.1 unnamed protein product [Coffea canephora]3.8e-2241.15Show/hide
Query:  INGPRPSPLLIHKDSRLIRKPS--------------------HPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFT--------PPNADQDHTVKNPSSD
        INGPRPSPL I+KDS +I+KPS                     P QP+IIYTHSPK+IHT+PKDFMALVQ+LTGF+          +   DHT+     D
Subjt:  INGPRPSPLLIHKDSRLIRKPS--------------------HPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFT--------PPNADQDHTVKNPSSD

Query:  NDSSSVLTHE--DNDRRSSFLSAD----------------DLP------NLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF
        NDSSSV + +  + D  S  +                   D+P      NL +    V RY       F+SP  V+SLSP+F+EF+KGLPE+
Subjt:  NDSSSVLTHE--DNDRRSSFLSAD----------------DLP------NLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF

KAG7013019.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-3158.28Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPPQ---PLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVLTHEDNDRRSS
        MSP K   I+GPRP PLL+HK SR IRKPS PPQ   P+IIYTHSPK+IHTQPKDFMALVQRLTG +PPNAD     K PS +NDSSSV+T ED++    
Subjt:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPPQ---PLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVLTHEDNDRRSS

Query:  FLSADDLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF
                 L  PRS                  VNSLSP+FMEFLKGLPEF
Subjt:  FLSADDLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF

XP_008466850.1 PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo]1.9e-3460Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVLTHED--NDRRSSF
        MSP KS  ING RPSPLLIH DSRL+RKP    QPLIIYTHSPK+IHT PKDFMALVQRLTGF PP    +      S+DNDS+S +T E+  N+++S+ 
Subjt:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVLTHED--NDRRSSF

Query:  LSADDLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF
                      SVL+YSSD T+PFSSP F++SLSP+FM+FLK LPEF
Subjt:  LSADDLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF

XP_022150646.1 VQ motif-containing protein 8, chloroplastic [Momordica charantia]2.6e-3963.74Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPP---QPLIIYTHSPKVIHTQPKDFMALVQRLTGFT---PPNADQDHTVKNPSSDNDSSSVLTHEDN--
        MSPAKSCDINGPRPSPLLIHK SRLIRKP  PP   QPLIIYTHSPK+IHTQPKDFMALVQRLTGFT   PP+AD      N + DNDSSSVLT E N  
Subjt:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPP---QPLIIYTHSPKVIHTQPKDFMALVQRLTGFT---PPNADQDHTVKNPSSDNDSSSVLTHEDN--

Query:  ---------------DRRSSFLSADDLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF
                        +  SFL+  D+P L  P    LRY+ D TS F+SPG  NSLSP+FMEFLKGLPEF
Subjt:  ---------------DRRSSFLSADDLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF

XP_038893302.1 VQ motif-containing protein 8, chloroplastic [Benincasa hispida]1.1e-3762.42Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPP------NADQDHTVKNPSSDNDSSSVLTHEDNDR
        MSP KSC+INGPRPSPLLIHKDSR IRKP    QP+IIYTHSPK+IHTQPKDFMALVQRLTGF PP      NA      +   +DNDSSS LT E+   
Subjt:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPP------NADQDHTVKNPSSDNDSSSVLTHEDNDR

Query:  RSSFLSADDLPNLLAPR---SSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF
                 +   L  R   SS+LRYSSD T+PFSSP  +NSLSP+FMEFLK LPEF
Subjt:  RSSFLSADDLPNLLAPR---SSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF

TrEMBL top hitse value%identityAlignment
A0A068TX72 VQ domain-containing protein1.8e-2241.15Show/hide
Query:  INGPRPSPLLIHKDSRLIRKPS--------------------HPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFT--------PPNADQDHTVKNPSSD
        INGPRPSPL I+KDS +I+KPS                     P QP+IIYTHSPK+IHT+PKDFMALVQ+LTGF+          +   DHT+     D
Subjt:  INGPRPSPLLIHKDSRLIRKPS--------------------HPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFT--------PPNADQDHTVKNPSSD

Query:  NDSSSVLTHE--DNDRRSSFLSAD----------------DLP------NLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF
        NDSSSV + +  + D  S  +                   D+P      NL +    V RY       F+SP  V+SLSP+F+EF+KGLPE+
Subjt:  NDSSSVLTHE--DNDRRSSFLSAD----------------DLP------NLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF

A0A0A0KT78 VQ domain-containing protein2.6e-3257.05Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTP------PNADQDHTVKNPSSDNDSSSVLTHEDNDR
        MSP KS +INGPRPSPLLIH  SRLIRKP    QPLIIYTHSPK+IHT PKDFMALVQRLTG  P      P+A    + +N + ++ SS V T ED + 
Subjt:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTP------PNADQDHTVKNPSSDNDSSSVLTHEDNDR

Query:  RSSFLSADDLPNLLAPRSSVLRYSS-DHTSPFSSPGFV-NSLSPNFMEFLKGLPEF
        + S               SVL+YSS D T+PFSSP F+ +SLSP+FM+FLK LPEF
Subjt:  RSSFLSADDLPNLLAPRSSVLRYSS-DHTSPFSSPGFV-NSLSPNFMEFLKGLPEF

A0A1S3CS67 VQ motif-containing protein 8, chloroplastic-like9.4e-3560Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVLTHED--NDRRSSF
        MSP KS  ING RPSPLLIH DSRL+RKP    QPLIIYTHSPK+IHT PKDFMALVQRLTGF PP    +      S+DNDS+S +T E+  N+++S+ 
Subjt:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVLTHED--NDRRSSF

Query:  LSADDLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF
                      SVL+YSSD T+PFSSP F++SLSP+FM+FLK LPEF
Subjt:  LSADDLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF

A0A5D3CFH5 VQ motif-containing protein 89.4e-3560Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVLTHED--NDRRSSF
        MSP KS  ING RPSPLLIH DSRL+RKP    QPLIIYTHSPK+IHT PKDFMALVQRLTGF PP    +      S+DNDS+S +T E+  N+++S+ 
Subjt:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVLTHED--NDRRSSF

Query:  LSADDLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF
                      SVL+YSSD T+PFSSP F++SLSP+FM+FLK LPEF
Subjt:  LSADDLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF

A0A6J1DC48 VQ motif-containing protein 8, chloroplastic1.3e-3963.74Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPP---QPLIIYTHSPKVIHTQPKDFMALVQRLTGFT---PPNADQDHTVKNPSSDNDSSSVLTHEDN--
        MSPAKSCDINGPRPSPLLIHK SRLIRKP  PP   QPLIIYTHSPK+IHTQPKDFMALVQRLTGFT   PP+AD      N + DNDSSSVLT E N  
Subjt:  MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPP---QPLIIYTHSPKVIHTQPKDFMALVQRLTGFT---PPNADQDHTVKNPSSDNDSSSVLTHEDN--

Query:  ---------------DRRSSFLSADDLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF
                        +  SFL+  D+P L  P    LRY+ D TS F+SPG  NSLSP+FMEFLKGLPEF
Subjt:  ---------------DRRSSFLSADDLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B4.7e-0735Show/hide
Query:  GPRPSPLLIHKDS-RLIRKP-------------SH---------PPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVL
        GP+P+PL +  DS ++I+KP             +H         PP P+ IYT +P++IHT P +FM LVQRLTG T  +     +  + S   D+S+++
Subjt:  GPRPSPLLIHKDS-RLIRKP-------------SH---------PPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVL

Q8LGD5 Protein MKS18.5e-0942.67Show/hide
Query:  KSCDINGPRPSPLLIHKDSRLIRKPSH---------------PPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFT
        +   I GPRPSPL +HKDS  I+KP                 P +P++IY  SPKV+H    +FM +VQRLTG +
Subjt:  KSCDINGPRPSPLLIHKDSRLIRKPSH---------------PPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFT

Q9CA36 VQ motif-containing protein 8, chloroplastic4.1e-1138.22Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKDSRLIRK---------PSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVLTHED
        M P +  +ING RPS L +  +S  I+K         P     P+IIY HSPKVIHT+ +DFMALVQRLTG        D  ++  +S++ SSSV+T E 
Subjt:  MSPAKSCDINGPRPSPLLIHKDSRLIRK---------PSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVLTHED

Query:  N---DRRSSFLSAD--------DLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPN
        N   D  ++  S D        D+P L  P S  L         F SP  +  +SPN
Subjt:  N---DRRSSFLSAD--------DLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPN

Q9LS54 VQ motif-containing protein 209.1e-1147.44Show/hide
Query:  PRPSPLLIHKDSRLIRKP---------SHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSD
        P P  L ++KDS +I+KP         + P  P+IIYTH+P++IHT PKDFMALVQ+LTG T  ++D+D    N  +D
Subjt:  PRPSPLLIHKDSRLIRKP---------SHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSD

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding3.3e-0835Show/hide
Query:  GPRPSPLLIHKDS-RLIRKP-------------SH---------PPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVL
        GP+P+PL +  DS ++I+KP             +H         PP P+ IYT +P++IHT P +FM LVQRLTG T  +     +  + S   D+S+++
Subjt:  GPRPSPLLIHKDS-RLIRKP-------------SH---------PPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVL

AT1G21326.1 VQ motif-containing protein1.3e-0937.74Show/hide
Query:  KSCDINGPRPSPLLIHKDS-RLIRKP-------------SH---------PPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDN
        +S  I GPRP PL +  DS ++I+KP             +H         PP P+IIYT SP++IHT P +FM LVQRLTG T  +        + S+  
Subjt:  KSCDINGPRPSPLLIHKDS-RLIRKP-------------SH---------PPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDN

Query:  DSSSVL
        D+S+++
Subjt:  DSSSVL

AT1G68450.1 VQ motif-containing protein2.9e-1238.22Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKDSRLIRK---------PSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVLTHED
        M P +  +ING RPS L +  +S  I+K         P     P+IIY HSPKVIHT+ +DFMALVQRLTG        D  ++  +S++ SSSV+T E 
Subjt:  MSPAKSCDINGPRPSPLLIHKDSRLIRK---------PSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVLTHED

Query:  N---DRRSSFLSAD--------DLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPN
        N   D  ++  S D        D+P L  P S  L         F SP  +  +SPN
Subjt:  N---DRRSSFLSAD--------DLPNLLAPRSSVLRYSSDHTSPFSSPGFVNSLSPN

AT3G18360.1 VQ motif-containing protein6.5e-1247.44Show/hide
Query:  PRPSPLLIHKDSRLIRKP---------SHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSD
        P P  L ++KDS +I+KP         + P  P+IIYTH+P++IHT PKDFMALVQ+LTG T  ++D+D    N  +D
Subjt:  PRPSPLLIHKDSRLIRKP---------SHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSD

AT3G18690.1 MAP kinase substrate 16.1e-1042.67Show/hide
Query:  KSCDINGPRPSPLLIHKDSRLIRKPSH---------------PPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFT
        +   I GPRPSPL +HKDS  I+KP                 P +P++IY  SPKV+H    +FM +VQRLTG +
Subjt:  KSCDINGPRPSPLLIHKDSRLIRKPSH---------------PPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCCAGCTAAATCCTGCGACATCAATGGCCCTCGCCCATCCCCCCTCCTAATCCACAAAGATTCTCGTTTGATCCGAAAGCCCTCTCACCCGCCGCAGCCGCTCAT
CATTTACACCCATTCCCCTAAAGTCATCCACACCCAGCCTAAGGATTTCATGGCTCTCGTCCAGCGCCTCACCGGCTTCACTCCCCCCAACGCCGATCAAGATCACACCG
TTAAGAATCCCTCCTCCGACAATGATTCTTCCTCGGTTCTCACCCACGAGGATAATGATCGCCGTTCTTCGTTTTTGTCGGCCGATGATCTTCCTAATTTGCTCGCTCCC
CGTTCTTCTGTTCTTAGATATTCCTCCGATCATACGTCGCCGTTTTCGTCTCCTGGGTTTGTTAATTCCTTGTCTCCCAATTTCATGGAGTTTCTCAAGGGCCTGCCTGA
ATTTTAA
mRNA sequenceShow/hide mRNA sequence
CCAAACTTCCACCCTATATAATCCCCTCCCGCCCCCATCTTTCTCCAACAAATTAACCACTTTTTTTCCCTCCTCTTTTCTTTAATTACTTCACTTTATTACAAATCAAA
AAACAAAAATAAAAAATCCGTTGTTGTAAATTGTAATTCCTCGAGCATGAGCCCAGCTAAATCCTGCGACATCAATGGCCCTCGCCCATCCCCCCTCCTAATCCACAAAG
ATTCTCGTTTGATCCGAAAGCCCTCTCACCCGCCGCAGCCGCTCATCATTTACACCCATTCCCCTAAAGTCATCCACACCCAGCCTAAGGATTTCATGGCTCTCGTCCAG
CGCCTCACCGGCTTCACTCCCCCCAACGCCGATCAAGATCACACCGTTAAGAATCCCTCCTCCGACAATGATTCTTCCTCGGTTCTCACCCACGAGGATAATGATCGCCG
TTCTTCGTTTTTGTCGGCCGATGATCTTCCTAATTTGCTCGCTCCCCGTTCTTCTGTTCTTAGATATTCCTCCGATCATACGTCGCCGTTTTCGTCTCCTGGGTTTGTTA
ATTCCTTGTCTCCCAATTTCATGGAGTTTCTCAAGGGCCTGCCTGAATTTTAATCATCTCAACAATTAATTCATCCACCTCTTTCCCTTTTCTCATATTGTTCTTTCATT
TCTCTTCATATTTTTATTTCCATCTTCTTTTACGTTATTATTATTATTATTTTTTTTTAGCGTTTTCGTGATCGATACGTAACTAGGGA
Protein sequenceShow/hide protein sequence
MSPAKSCDINGPRPSPLLIHKDSRLIRKPSHPPQPLIIYTHSPKVIHTQPKDFMALVQRLTGFTPPNADQDHTVKNPSSDNDSSSVLTHEDNDRRSSFLSADDLPNLLAP
RSSVLRYSSDHTSPFSSPGFVNSLSPNFMEFLKGLPEF