CuGenDBv2

Gene ID	Tan0022735
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA/RNA polymerases superfamily protein
Genome location	LG11:51688358..51694111
RNA-Seq Expression	Tan0022735
Synteny	Tan0022735
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]

9.1e-16

88.68

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Query:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF
        I+DRL+KT RFIPIKATSTLDQLAKLYVDRIVSQ+GVPVSIVSDRDPRFT  F
Subjt:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF

KAA0048607.1 hypothetical protein E6C27_scaffold61G002600 [Cucumis melo var. makuwa]

5.4e-16

84.91

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Query:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF
        I+DRL++T RFIP+KATSTLDQLA+LYVD+IVSQYGVPVSIVSDRDPRFTF F
Subjt:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF

KAA0063169.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

3.1e-16

88.68

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Query:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF
        I+DRL+KTTRFIPIKATSTLDQLA+LYVD+IVSQYGVPVSIVSDRDPRFT  F
Subjt:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]

9.1e-16

88.68

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Query:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF
        I+DRL+KT RFIPIKATSTLDQLAKLYVDRIVSQ+GVPVSIVSDRDPRFT  F
Subjt:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF

TYK11723.1 reverse transcriptase [Cucumis melo var. makuwa]

2.4e-16

90.57

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Query:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF
        I+DRL+KTTRFIPIK TSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFT  F
Subjt:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T7M6 Reverse transcriptase

4.4e-16

88.68

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Query:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF
        I+DRL+KT RFIPIKATSTLDQLAKLYVDRIVSQ+GVPVSIVSDRDPRFT  F
Subjt:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF

A0A5A7VC40 DNA/RNA polymerases superfamily protein

1.5e-16

88.68

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Query:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF
        I+DRL+KTTRFIPIKATSTLDQLA+LYVD+IVSQYGVPVSIVSDRDPRFT  F
Subjt:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF

A0A5D3BTP3 Reverse transcriptase

4.4e-16

88.68

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Query:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF
        I+DRL+KT RFIPIKATSTLDQLAKLYVDRIVSQ+GVPVSIVSDRDPRFT  F
Subjt:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF

A0A5D3CIH8 Reverse transcriptase

1.2e-16

90.57

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Query:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF
        I+DRL+KTTRFIPIK TSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFT  F
Subjt:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF

A0A5D3DU25 Uncharacterized protein

2.6e-16

84.91

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Query:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF
        I+DRL++T RFIP+KATSTLDQLA+LYVD+IVSQYGVPVSIVSDRDPRFTF F
Subjt:  IMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTAATTTCCATCCTATTTCCCTATAAATGGTTGCATGAGATGCAATTTTTGAAGCTAAGCAAAGTTAAGGCTTTTTGGAAAACCCCTAGCATTCTCTCAAATTGGTT
TCGTGGGAGAAGGAGAAGGGAAGAAGAAGAGAGGGAACTTTCTGGTTTTAAGCTTGAGGAAGAGAGAAGAAGGATTACTAAAAGTTTCCATGCTCATGTACTGTTGTCGA
CGTTGAGTGTACTCCGTGACAACAATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATAACCTACCATATGTTTCTTATACAAGTATAGTATGCTTATCAGGTAAAGCA
GGGTCAACAAGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTGTCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTCACAATTATGGATAGACT
CTCTAAGACAACACGGTTTATACCGATTAAAGCGACATCTACACTTGATCAGCTTGCTAAGCTATACGTCGACAGAATTGTGAGTCAATACGGAGTGCCAGTGTCCATAG
TTTCAGATAGGGACCCGAGATTTACTTTTACGTTTTAG

mRNA sequence

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Protein sequence

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MVISILFPYKWLHEMQFLKLSKVKAFWKTPSILSNWFRGRRRREEEERELSGFKLEEERRRITKSFHAHVLLSTLSVLRDNNAVVEIELPVPDNLPYVSYTSIVCLSGKA
GSTSIVREVNDVCWLHAVCRAKLAGSSGGGVTIMDRLSKTTRFIPIKATSTLDQLAKLYVDRIVSQYGVPVSIVSDRDPRFTFTF

Tan0022735 (gene) of Snake gourd v1 genome