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Tan0022736 (gene) of Snake gourd v1 genome

Gene IDTan0022736
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionlight-harvesting complex-like protein 3 isotype 1, chloroplastic
Genome locationLG01:4240513..4243368
RNA-Seq ExpressionTan0022736
SyntenyTan0022736
Gene Ontology termsGO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576837.1 Mediator of RNA polymerase II transcription subunit 31, partial [Cucurbita argyrosperma subsp. sororia]4.4e-2371.25Show/hide
Query:  MMKNPTPE-VRTIGVGDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVII
        MMKNPTPE ++T  VGDR    A +RHGNVAS  DKL+EDTD  NHG+  T TD RWKNGTWDLNMFVKNG MDWEGVI+
Subjt:  MMKNPTPE-VRTIGVGDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVII

KAG7014857.1 Light-harvesting complex-like protein 3 isotype 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]7.4e-2361.86Show/hide
Query:  MMKNPTPE-VRTIGVGDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIYLLTNT
        M KNPTPE ++T  VGDR    A +RHGNVAS  DKL+EDTD  NHG+  T TD RWKNGTWDLNMFVKNG MDWEGVI+      K+  +Y  T T
Subjt:  MMKNPTPE-VRTIGVGDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIYLLTNT

XP_022922577.1 light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita moschata]9.7e-2361.86Show/hide
Query:  MMKNPTPE-VRTIGVGDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIYLLTNT
        M KNPTPE ++T  VGDR  + A +RHGNVAS  DKL+EDTD  NHG+  T TD RWKNGTWDLNMFVKNG MDWEGVI+      K+  +Y  T T
Subjt:  MMKNPTPE-VRTIGVGDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIYLLTNT

XP_023551912.1 light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo subsp. pepo]7.4e-2362.89Show/hide
Query:  MMKNPTPE-VRTIGVGDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIYLLTNT
        M KNPTPE +RT  VGDR    A +RHGNVAS  DKL+EDTD  NHG+  T TD RWKNGTWDLNMFVKNG MDWEGVI+      K+  +Y  T T
Subjt:  MMKNPTPE-VRTIGVGDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIYLLTNT

XP_038875279.1 light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hispida]4.7e-2566.67Show/hide
Query:  KNPTPEV-RTIGVGDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIY
        KNPT +V  T+ VGDR GVGA ERHGNVAS R+K++ED D WNHGE+F  TD RWKNGTWDLNMFVKNG MDWEGVI+      K+  +Y
Subjt:  KNPTPEV-RTIGVGDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIY

TrEMBL top hitse value%identityAlignment
A0A1S3BXB8 uncharacterized protein LOC1034944451.5e-1662.35Show/hide
Query:  MMKNPTPEV-RTIGVGDRHGVGAAERH---GNVASGR-DKLDEDTDVW-NHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVII
        M KNPTP+V  T+ VG+R    A ++H   GNVAS    K++ED D W N+GERF  TD RWKNGTWDLNMFVKNG MDWEGVI+
Subjt:  MMKNPTPEV-RTIGVGDRHGVGAAERH---GNVASGR-DKLDEDTDVW-NHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVII

A0A5D3CYT8 Chlorophyll A-B binding protein1.5e-1662.35Show/hide
Query:  MMKNPTPEV-RTIGVGDRHGVGAAERH---GNVASGR-DKLDEDTDVW-NHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVII
        M KNPTP+V  T+ VG+R    A ++H   GNVAS    K++ED D W N+GERF  TD RWKNGTWDLNMFVKNG MDWEGVI+
Subjt:  MMKNPTPEV-RTIGVGDRHGVGAAERH---GNVASGR-DKLDEDTDVW-NHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVII

A0A6J1CHN0 light-harvesting complex-like protein 3 isotype 1, chloroplastic1.6e-1863.33Show/hide
Query:  PTPE-VRTIGV--GDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIY
        P PE V TI V  G R     AERH     GRDKL+EDTD WNHGERF  TD RWKNGTWDLNMFVKNG MDWEGVI+      K   IY
Subjt:  PTPE-VRTIGV--GDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIY

A0A6J1E3P1 light-harvesting complex-like protein 3 isotype 1, chloroplastic4.7e-2361.86Show/hide
Query:  MMKNPTPE-VRTIGVGDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIYLLTNT
        M KNPTPE ++T  VGDR  + A +RHGNVAS  DKL+EDTD  NHG+  T TD RWKNGTWDLNMFVKNG MDWEGVI+      K+  +Y  T T
Subjt:  MMKNPTPE-VRTIGVGDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIYLLTNT

A0A6J1JAE2 light-harvesting complex-like protein 3 isotype 1, chloroplastic5.2e-2260Show/hide
Query:  MMKNPTPE-VRTIGVGDRHGV-GAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIYLLTNTGE
        M KNPTPE +RT  VG+R     A +RHGNVAS  DKL+EDTD  NHG+  T TD RWKNGTWDLNMFVKNG MDWEGVI+      K+  +Y  T T +
Subjt:  MMKNPTPE-VRTIGVGDRHGV-GAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIYLLTNTGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G17600.1 Chlorophyll A-B binding family protein1.3e-0459.26Show/hide
Query:  DVRWKNGTWDLNMFVKNGNMDWEGVII
        D RW NGTWDL  F K+G  DW+ VI+
Subjt:  DVRWKNGTWDLNMFVKNGNMDWEGVII

AT5G47110.1 Chlorophyll A-B binding family protein8.2e-0451.85Show/hide
Query:  DVRWKNGTWDLNMFVKNGNMDWEGVII
        + +W NGTWDL  F K+G  DW+ VI+
Subjt:  DVRWKNGTWDLNMFVKNGNMDWEGVII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAAAACCCGACACCGGAGGTTAGAACTATCGGCGTCGGGGACCGACACGGTGTTGGTGCTGCTGAACGACATGGAAACGTTGCATCGGGTAGAGACAAGCTAGA
TGAAGATACTGATGTTTGGAACCATGGAGAAAGGTTCACACTCACGGATGTGAGATGGAAAAATGGGACATGGGATCTGAATATGTTTGTGAAGAACGGTAATATGGATT
GGGAAGGTGTTATTATTGTTTACCAAACAGACACTAAATATTGGTTTATTTATTTACTAACAAATACTGGTGAAAGTTCAAAATTCAAATTATATTTATTGTTATTGTTC
TTAATAGCTATTGAAGGTAGGTTTGAAGTTTTCATATGTCTAACAACCTATGGATATAAGTTCGAAATATATTGTACTAAAAAAGGTTTAAAATACATTTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGATGAAAAACCCGACACCGGAGGTTAGAACTATCGGCGTCGGGGACCGACACGGTGTTGGTGCTGCTGAACGACATGGAAACGTTGCATCGGGTAGAGACAAGCTAGA
TGAAGATACTGATGTTTGGAACCATGGAGAAAGGTTCACACTCACGGATGTGAGATGGAAAAATGGGACATGGGATCTGAATATGTTTGTGAAGAACGGTAATATGGATT
GGGAAGGTGTTATTATTGTTTACCAAACAGACACTAAATATTGGTTTATTTATTTACTAACAAATACTGGTGAAAGTTCAAAATTCAAATTATATTTATTGTTATTGTTC
TTAATAGCTATTGAAGGTAGGTTTGAAGTTTTCATATGTCTAACAACCTATGGATATAAGTTCGAAATATATTGTACTAAAAAAGGTTTAAAATACATTTTATAG
Protein sequenceShow/hide protein sequence
MMKNPTPEVRTIGVGDRHGVGAAERHGNVASGRDKLDEDTDVWNHGERFTLTDVRWKNGTWDLNMFVKNGNMDWEGVIIVYQTDTKYWFIYLLTNTGESSKFKLYLLLLF
LIAIEGRFEVFICLTTYGYKFEIYCTKKGLKYIL