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Tan0022768 (gene) of Snake gourd v1 genome

Gene IDTan0022768
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionarabinogalactan peptide 13-like
Genome locationLG07:9349250..9349435
RNA-Seq ExpressionTan0022768
SyntenyTan0022768
Gene Ontology termsGO:0048767 - root hair elongation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR039281 - Arabinogalactan protein 3/12/13/14/21


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570311.1 hypothetical protein SDJN03_29226, partial [Cucurbita argyrosperma subsp. sororia]1.0e-1388.52Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL
        MEAIKLKLFLV+LL  VAFA T AQ AAPSEAPAPAPASDAPLF PTFFASLSALVFAFFL
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL

KAG6605834.1 Arabinogalactan protein 14, partial [Cucurbita argyrosperma subsp. sororia]1.7e-1385.25Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL
        MEA+KLKLFL VLLV+VAFAGT+AQAAAPSEAPAPAPASDAPL Y +FFASLS LVFA+FL
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL

XP_022944304.1 arabinogalactan peptide 13-like [Cucurbita moschata]9.2e-1590.16Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL
        MEAIKLKLFLV+LL  VAFA T AQ AAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL

XP_023513159.1 arabinogalactan peptide 14-like [Cucurbita pepo subsp. pepo]2.1e-1185.25Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL
        MEAIKLKL LV+LL  VAFA T AQ AAPSE  APAPASDAPLFYPTFFASLSALVFAFFL
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL

XP_038902540.1 arabinogalactan protein 13-like [Benincasa hispida]3.5e-1486.89Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL
        MEAIKLKLFLV+LL  +AFAGTIAQ+A PSEAPAPAPASDA LFYPTFFASLSAL+FAFFL
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL

TrEMBL top hitse value%identityAlignment
A0A087GBH1 Uncharacterized protein5.5e-0559.65Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVF
        MEA+K+KLF+ VL+ ++AF+ T+ QAAA  EAPAP+P SDA  F PTFFAS+  L F
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVF

A0A438JV44 Arabinogalactan peptide 141.4e-0559.02Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL
        MEA+K+KLFL V+++++A +    Q AA + APAPAPASDA +F PTFFASL+AL F F L
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL

A0A6J1FWG8 arabinogalactan peptide 13-like4.4e-1590.16Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL
        MEAIKLKLFLV+LL  VAFA T AQ AAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL

A0A6J1J5K6 arabinogalactan peptide 13-like4.4e-1590.16Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL
        MEAIKLKLFLV+LL  VAFA T AQ AAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL

F6GUN4 Uncharacterized protein1.4e-0559.02Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL
        MEA+K+KLFL V+++++A +    Q AA + APAPAPASDA +F PTFFASL+AL F F L
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL

SwissProt top hitse value%identityAlignment
Q9C8A4 Arabinogalactan protein 214.4e-0449.15Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAF
        MEA+K+K+ + +++V VAF+   A  AA  EAPAP+P SDA +F P  FAS+ AL   F
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAF

Q9LJD9 Arabinogalactan protein 125.3e-0547.46Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAF
        ME++K+KL +V+++ +VAF+  +   AA +EAPAP+P SDA +F P  FAS++AL   F
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAF

Q9LVC0 Arabinogalactan protein 141.5e-0755Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFF
        MEA+K+KL++VVL+ V+AF+ T+ Q  A  +APAP+P SDA  F PTFFAS++ + F FF
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFF

Q9STQ3 Arabinogalactan protein 132.4e-0552.54Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAF
        MEA+K++LF+ VL+  +AF+    Q AA  EAPAP+P SDA L  P FFAS++ L F F
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAF

Arabidopsis top hitse value%identityAlignment
AT1G55330.1 arabinogalactan protein 213.2e-0549.15Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAF
        MEA+K+K+ + +++V VAF+   A  AA  EAPAP+P SDA +F P  FAS+ AL   F
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAF

AT3G13520.1 arabinogalactan protein 123.7e-0647.46Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAF
        ME++K+KL +V+++ +VAF+  +   AA +EAPAP+P SDA +F P  FAS++AL   F
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAF

AT4G26320.1 arabinogalactan protein 131.7e-0652.54Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAF
        MEA+K++LF+ VL+  +AF+    Q AA  EAPAP+P SDA L  P FFAS++ L F F
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAF

AT5G56540.1 arabinogalactan protein 141.0e-0855Show/hide
Query:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFF
        MEA+K+KL++VVL+ V+AF+ T+ Q  A  +APAP+P SDA  F PTFFAS++ + F FF
Subjt:  MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCAATCAAGTTGAAGCTTTTCCTGGTGGTGCTGTTGGTGGTGGTGGCCTTTGCTGGCACCATTGCCCAAGCTGCTGCTCCTTCTGAGGCTCCTGCTCCTGCTCC
TGCCTCTGATGCTCCTCTCTTTTACCCCACCTTCTTTGCTTCTCTATCTGCTCTTGTTTTTGCCTTCTTCCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCAATCAAGTTGAAGCTTTTCCTGGTGGTGCTGTTGGTGGTGGTGGCCTTTGCTGGCACCATTGCCCAAGCTGCTGCTCCTTCTGAGGCTCCTGCTCCTGCTCC
TGCCTCTGATGCTCCTCTCTTTTACCCCACCTTCTTTGCTTCTCTATCTGCTCTTGTTTTTGCCTTCTTCCTTTAA
Protein sequenceShow/hide protein sequence
MEAIKLKLFLVVLLVVVAFAGTIAQAAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL