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Tan0022797 (gene) of Snake gourd v1 genome

Gene IDTan0022797
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionNuclear pore complex protein NUP62
Genome locationLG09:34821690..34824609
RNA-Seq ExpressionTan0022797
SyntenyTan0022797
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0015031 - protein transport (biological process)
GO:0005643 - nuclear pore (cellular component)
GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022959229.1 nuclear pore complex protein NUP62 isoform X2 [Cucurbita moschata]5.6e-0877.36Show/hide
Query:  KKRKCLQRL-IEVAKVVETQAELERKLELIETHQQEVFTNGLVCLSPSILIFN
        + R  L RL IEVAKVVETQ ELE+KLELIETHQQEVFT GLVCLS SIL F+
Subjt:  KKRKCLQRL-IEVAKVVETQAELERKLELIETHQQEVFTNGLVCLSPSILIFN
TrEMBL top hitse value%identityAlignment
A0A6J1H7F5 nuclear pore complex protein NUP62 isoform X22.7e-0877.36Show/hide
Query:  KKRKCLQRL-IEVAKVVETQAELERKLELIETHQQEVFTNGLVCLSPSILIFN
        + R  L RL IEVAKVVETQ ELE+KLELIETHQQEVFT GLVCLS SIL F+
Subjt:  KKRKCLQRL-IEVAKVVETQAELERKLELIETHQQEVFTNGLVCLSPSILIFN
SwissProt top hitse value%identityAlignment
Q8L7F7 Nuclear pore complex protein NUP623.0e-0475.68Show/hide
Query:  KKRKCLQRL-IEVAKVVETQAELERKLELIETHQQEV
        + R  L RL IEVAKVVETQ+ LER+LELIETHQQEV
Subjt:  KKRKCLQRL-IEVAKVVETQAELERKLELIETHQQEV
Arabidopsis top hitse value%identityAlignment
AT2G45000.1 structural constituent of nuclear pore2.1e-0575.68Show/hide
Query:  KKRKCLQRL-IEVAKVVETQAELERKLELIETHQQEV
        + R  L RL IEVAKVVETQ+ LER+LELIETHQQEV
Subjt:  KKRKCLQRL-IEVAKVVETQAELERKLELIETHQQEV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATTCGGTTTTCATCAAAAAAAAGAAAATGTCTTCAAAGACTTATTGAAGTTGCAAAGGTGGTAGAGACCCAAGCCGAGCTGGAGAGGAAATTGGAGCTGATTGA
AACTCACCAACAAGAGGTATTCACTAATGGCCTTGTGTGCCTCTCTCCTTCAATACTTATTTTTAACATGACTTTTTTCACCTATGGCATTGTGTGCCTTTGTCCTATCT
ATTATTTTTCTTTTTTGGTTTCAGTTAAATCATCATTTAGGAATTTGGAGGTTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATTCGGTTTTCATCAAAAAAAAGAAAATGTCTTCAAAGACTTATTGAAGTTGCAAAGGTGGTAGAGACCCAAGCCGAGCTGGAGAGGAAATTGGAGCTGATTGA
AACTCACCAACAAGAGGTATTCACTAATGGCCTTGTGTGCCTCTCTCCTTCAATACTTATTTTTAACATGACTTTTTTCACCTATGGCATTGTGTGCCTTTGTCCTATCT
ATTATTTTTCTTTTTTGGTTTCAGTTAAATCATCATTTAGGAATTTGGAGGTTTGCTAAGATTGGATTCGTTTTTTTTTTTTGATGCAGTAAGATTTGAGTCATTAGGGG
AATTTTTTTTTTTGATGAGAAACTTATAAGCATTTCATTGATGCTATGAAATGTACAAAAGGGGACCCAAATACATAAGGGTGTAGGGACCCAATTACAAAAGGTTTTAC
CAATTACTAATAAGGGAAGTAAGACTATAGTCACCAAAAAAGATGAGAATTTACACCAAGAGAAAGCAAGGTAAAGAAGGTGTTCTAGAACAATGTGGGGTTCTCTAGCG
ATGTCGTTGAAGAGCTTTTTATTTCGTTCAAGCCATATGGACCATAGAAGAGCTTTAACGATGTTCTCCCATAAGCATGCCTTTCCTTGTGTGTATGGATGACCCAACAC
GAGAGCCTCAAGGATTGATGTCATAGTGTTTGGGAATACAAGCCTTTAGGATTCTAGGCCAAATGCTGGAAGTGAATTGGCATTTGGTGAAGACATGTCCCATAGATTCA
CATGCATTTTTACTTAGAACACACCAATTTGGAGCTGAGACTAACCATGAGCATTTTTTTGAATTGTATCGACAGTGTTAATCCTCTCGTGGCTGACTTCCCAAAGGAAA
AAACGAACTTTTTTGGAGATGTGACCCTTCCAAATGTTTCGGTAAAGCTAAATGTGTGTGAGGTGAGGTTGTTGATGGATGATAATCGGCGAGTGAGGGATTTTGCTGTG
AAATGTCCCTTGTTATCTAACCTCCACTTCCAAGAATCTTCAGCTAA
Protein sequenceShow/hide protein sequence
MKIRFSSKKRKCLQRLIEVAKVVETQAELERKLELIETHQQEVFTNGLVCLSPSILIFNMTFFTYGIVCLCPIYYFSFLVSVKSSFRNLEVC