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Tan0022800 (gene) of Snake gourd v1 genome

Gene IDTan0022800
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein
Genome locationLG09:16441752..16459334
RNA-Seq ExpressionTan0022800
SyntenyTan0022800
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.2e-0586.21Show/hide
Query:  KDDGSAGRAPLHRRINNKRWLYWACPTQR
        KDDGSAGR PLHRR  +KRWLYWACPTQR
Subjt:  KDDGSAGRAPLHRRINNKRWLYWACPTQR
KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]5.3e-1263.89Show/hide
Query:  GGPHYDKDDGSAGRAPLHRRINNKRWLYWACPTQRRFSFFQCFQTFQ-----VEIELLVPDILPWPAGSSLS
        GGPHYDKDDG+A RAPLHRR  +KRWLYWACPT RR       +TF      VEIEL VPD LP  A SS S
Subjt:  GGPHYDKDDGSAGRAPLHRRINNKRWLYWACPTQRRFSFFQCFQTFQ-----VEIELLVPDILPWPAGSSLS
TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]5.3e-1263.89Show/hide
Query:  GGPHYDKDDGSAGRAPLHRRINNKRWLYWACPTQRRFSFFQCFQTFQ-----VEIELLVPDILPWPAGSSLS
        GGPHYDKDDG+A RAPLHRR  +KRWLYWACPT RR       +TF      VEIEL VPD LP  A SS S
Subjt:  GGPHYDKDDGSAGRAPLHRRINNKRWLYWACPTQRRFSFFQCFQTFQ-----VEIELLVPDILPWPAGSSLS
TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]7.0e-0482.76Show/hide
Query:  KDDGSAGRAPLHRRINNKRWLYWACPTQR
        KDDGSAGR PLHRR  +KRWLYWAC TQR
Subjt:  KDDGSAGRAPLHRRINNKRWLYWACPTQR
TrEMBL top hitse value%identityAlignment
A0A5A7TCY8 DNA/RNA polymerases superfamily protein4.0e-0586.21Show/hide
Query:  KDDGSAGRAPLHRRINNKRWLYWACPTQR
        KDDGSAGR PLHRR  +KRWLYWACPTQR
Subjt:  KDDGSAGRAPLHRRINNKRWLYWACPTQR
A0A5A7VGQ5 Uncharacterized protein2.6e-1263.89Show/hide
Query:  GGPHYDKDDGSAGRAPLHRRINNKRWLYWACPTQRRFSFFQCFQTFQ-----VEIELLVPDILPWPAGSSLS
        GGPHYDKDDG+A RAPLHRR  +KRWLYWACPT RR       +TF      VEIEL VPD LP  A SS S
Subjt:  GGPHYDKDDGSAGRAPLHRRINNKRWLYWACPTQRRFSFFQCFQTFQ-----VEIELLVPDILPWPAGSSLS
A0A5D3BG85 Uncharacterized protein2.6e-1263.89Show/hide
Query:  GGPHYDKDDGSAGRAPLHRRINNKRWLYWACPTQRRFSFFQCFQTFQ-----VEIELLVPDILPWPAGSSLS
        GGPHYDKDDG+A RAPLHRR  +KRWLYWACPT RR       +TF      VEIEL VPD LP  A SS S
Subjt:  GGPHYDKDDGSAGRAPLHRRINNKRWLYWACPTQRRFSFFQCFQTFQ-----VEIELLVPDILPWPAGSSLS
A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein3.4e-0482.76Show/hide
Query:  KDDGSAGRAPLHRRINNKRWLYWACPTQR
        KDDGSAGR PLHRR  +KRWLYWAC TQR
Subjt:  KDDGSAGRAPLHRRINNKRWLYWACPTQR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTATTGAATTTCCGAAGTGTAAACCCGAGATCTTTCTTTGGAACTTCCTTATTATCAAACAACAAAAGAACGGAAGAAATGAATGCTTAAAACTTGGTTTTCCTTA
CTCTAGTTCTAACACTGTGAGTGACAAAACGAACTTCGAAAATGATCCGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAA
TAAATAACAAACGTTGGTTGTACTGGGCATGCCCTACACAACGTAGATTCTCATTCTTTCAATGTTTCCAAACTTTTCAGGTAGAGATCGAGCTCCTGGTACCTGATATC
CTGCCATGGCCTGCTGGAAGCTCCTTAAGTCTTGATACTTTGTACGTGGCTAGTGTTGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTATTGAATTTCCGAAGTGTAAACCCGAGATCTTTCTTTGGAACTTCCTTATTATCAAACAACAAAAGAACGGAAGAAATGAATGCTTAAAACTTGGTTTTCCTTA
CTCTAGTTCTAACACTGTGAGTGACAAAACGAACTTCGAAAATGATCCGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAA
TAAATAACAAACGTTGGTTGTACTGGGCATGCCCTACACAACGTAGATTCTCATTCTTTCAATGTTTCCAAACTTTTCAGGTAGAGATCGAGCTCCTGGTACCTGATATC
CTGCCATGGCCTGCTGGAAGCTCCTTAAGTCTTGATACTTTGTACGTGGCTAGTGTTGTATAG
Protein sequenceShow/hide protein sequence
MFIEFPKCKPEIFLWNFLIIKQQKNGRNECLKLGFPYSSSNTVSDKTNFENDPGGPHYDKDDGSAGRAPLHRRINNKRWLYWACPTQRRFSFFQCFQTFQVEIELLVPDI
LPWPAGSSLSLDTLYVASVV