CuGenDBv2

Gene ID	Tan0022816
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase III subunit RPC6-like
Genome location	LG10:4571632..4572135
RNA-Seq Expression	Tan0022816
Synteny	Tan0022816
Gene Ontology terms	GO:0005666 - RNA polymerase III complex (cellular component)
InterPro domains	IPR016049 - RNA polymerase Rpc34-like IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0052744.1 DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa]

1.6e-38

58.33

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Query:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV
        MKRET FAE+ VTKSLK+LQ KGLIK+VQHYQNKG+                                    CARMIQ+KKL+TIEGIVESFK+SGA KV
Subjt:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV

Query:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG
        EL++EQI+EIVNALVLD++V EVKS+G GEF+F+P+GKICYK CS+GG+KG  + G
Subjt:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG

TYK13079.1 DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa]

1.6e-38

58.33

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Query:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV
        MKRET FAE+ VTKSLK+LQ KGLIK+VQHYQNKG+                                    CARMIQ+KKL+TIEGIVESFK+SGA KV
Subjt:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV

Query:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG
        EL++EQI+EIVNALVLD++V EVKS+G GEF+F+P+GKICYK CS+GG+KG  + G
Subjt:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG

XP_008439941.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo]

1.6e-38

58.33

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Query:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV
        MKRET FAE+ VTKSLK+LQ KGLIK+VQHYQNKG+                                    CARMIQ+KKL+TIEGIVESFK+SGA KV
Subjt:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV

Query:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG
        EL++EQI+EIVNALVLD++V EVKS+G GEF+F+P+GKICYK CS+GG+KG  + G
Subjt:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG

XP_022149571.1 DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia]

4.8e-40

59.62

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Query:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV
        +KRET +A++ VTKSLKALQAKG+IK+V+HYQNKG+                                   FC RMIQK K+ TIEGIV+SFKKSGASKV
Subjt:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV

Query:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG
        +LS+EQIQEIVNALVLD+EVMEVKS G+GEFDF+P+GKICYKC +KGGVKG  + G
Subjt:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG

XP_022149573.1 DNA-directed RNA polymerase III subunit rpc6 isoform X2 [Momordica charantia]

4.8e-40

59.62

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Query:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV
        +KRET +A++ VTKSLKALQAKG+IK+V+HYQNKG+                                   FC RMIQK K+ TIEGIV+SFKKSGASKV
Subjt:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV

Query:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG
        +LS+EQIQEIVNALVLD+EVMEVKS G+GEFDF+P+GKICYKC +KGGVKG  + G
Subjt:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AZZ6 DNA-directed RNA polymerase III subunit RPC6-like

7.5e-39

58.33

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Query:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV
        MKRET FAE+ VTKSLK+LQ KGLIK+VQHYQNKG+                                    CARMIQ+KKL+TIEGIVESFK+SGA KV
Subjt:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV

Query:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG
        EL++EQI+EIVNALVLD++V EVKS+G GEF+F+P+GKICYK CS+GG+KG  + G
Subjt:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG

A0A5A7UBI4 DNA-directed RNA polymerase III subunit RPC6-like

7.5e-39

58.33

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Query:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV
        MKRET FAE+ VTKSLK+LQ KGLIK+VQHYQNKG+                                    CARMIQ+KKL+TIEGIVESFK+SGA KV
Subjt:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV

Query:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG
        EL++EQI+EIVNALVLD++V EVKS+G GEF+F+P+GKICYK CS+GG+KG  + G
Subjt:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG

A0A5D3CS47 DNA-directed RNA polymerase III subunit RPC6-like

7.5e-39

58.33

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Query:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV
        MKRET FAE+ VTKSLK+LQ KGLIK+VQHYQNKG+                                    CARMIQ+KKL+TIEGIVESFK+SGA KV
Subjt:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV

Query:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG
        EL++EQI+EIVNALVLD++V EVKS+G GEF+F+P+GKICYK CS+GG+KG  + G
Subjt:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG

A0A6J1D758 DNA-directed RNA polymerase III subunit rpc6 isoform X2

2.3e-40

59.62

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Query:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV
        +KRET +A++ VTKSLKALQAKG+IK+V+HYQNKG+                                   FC RMIQK K+ TIEGIV+SFKKSGASKV
Subjt:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV

Query:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG
        +LS+EQIQEIVNALVLD+EVMEVKS G+GEFDF+P+GKICYKC +KGGVKG  + G
Subjt:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG

A0A6J1D8D1 DNA-directed RNA polymerase III subunit rpc6 isoform X1

2.3e-40

59.62

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Query:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV
        +KRET +A++ VTKSLKALQAKG+IK+V+HYQNKG+                                   FC RMIQK K+ TIEGIV+SFKKSGASKV
Subjt:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQKKKLVTIEGIVESFKKSGASKV

Query:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG
        +LS+EQIQEIVNALVLD+EVMEVKS G+GEFDF+P+GKICYKC +KGGVKG  + G
Subjt:  ELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSKGGVKGSLEQG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G23710.1 DNA binding;DNA-directed RNA polymerases

3.1e-08

28.38

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Query:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQ--KKKLVTIEGIVESFKKSGAS
        +KRE     T VT+ + +L+ K LIK V +  NKG                                     C  +++  ++++VT+E +   F K    
Subjt:  MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRN--------------------------------STFCARMIQ--KKKLVTIEGIVESFKKSGAS

Query:  KVELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSK
        + +LS +Q +EI+  L+LD+ +MEVKSNG  EF    +G++CY+   K
Subjt:  KVELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYKCCSK

Sequences

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CDS sequence

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ATGAAAAGAGAAACAAATTTTGCTGAAACTACAGTAACTAAATCACTCAAGGCCCTTCAAGCCAAAGGCCTGATAAAAGTGGTTCAACACTATCAGAACAAAGGAAGAAA
TTCTACATTTTGTGCAAGAATGATACAGAAGAAGAAGCTGGTCACCATTGAAGGGATTGTGGAGTCTTTCAAGAAGAGTGGAGCTTCTAAAGTGGAGTTGTCTAAGGAAC
AAATTCAAGAGATTGTAAATGCTTTGGTGTTGGATCATGAAGTAATGGAAGTGAAGAGCAATGGAACTGGAGAATTTGATTTTATGCCTGTTGGGAAGATATGTTATAAG
TGTTGTTCTAAAGGAGGTGTTAAAGGGAGCCTAGAACAGGGCAATGGCTTCTATTCCTTGTGCAGTTTGTCCAAGGATTAG

mRNA sequence

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Protein sequence

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MKRETNFAETTVTKSLKALQAKGLIKVVQHYQNKGRNSTFCARMIQKKKLVTIEGIVESFKKSGASKVELSKEQIQEIVNALVLDHEVMEVKSNGTGEFDFMPVGKICYK
CCSKGGVKGSLEQGNGFYSLCSLSKD

Tan0022816 (gene) of Snake gourd v1 genome