| GenBank top hits | e value | %identity | Alignment |
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| KAA0034863.1 gag/pol protein [Cucumis melo var. makuwa] | 3.0e-71 | 50.83 | Show/hide |
Query: MSDVLAKKHELMVSAKEIMESLRNVWAAVLFGRHDSLKSFSTPRMKEGRRPS----------KECRGKCCLTVLSRGSTCRMKLVAPSRPSE--EEDEEG
+S+VL KKHE M++A + E + N+ H ++ + + E R S + R K + RGST K V S ++ ++ + G
Subjt: MSDVLAKKHELMVSAKEIMESLRNVWAAVLFGRHDSLKSFSTPRMKEGRRPS----------KECRGKCCLTVLSRGSTCRMKLVAPSRPSE--EEDEEG
Query: KSDRLCRQEARRSRRLRERK-VFPPCNGAILWRETVPKFTVERK--NQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCES
+ ++ A+ ++ + K + CN W+ PK+ E+K Q T+ K+ +SP+ENAHLWHLRLGH+NL RIEKLVK+GLL+ELEENSLPVCES
Subjt: KSDRLCRQEARRSRRLRERK-VFPPCNGAILWRETVPKFTVERK--NQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCES
Query: CLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTE
CLEGKMTKRPF+GKG+ +KEPLELVHSDLCGPMN KARGG+EYF++F DDYSRYGY+YLM KSE LEKFKEYK EVEN L K++KT RS+RG EYMD +
Subjt: CLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTE
Query: F
F
Subjt: F
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| KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa] | 5.8e-67 | 79.49 | Show/hide |
Query: KNQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFV
K T+ K+ K+SPKENAHLWHLRLGHINL RIE+LVK+GLL+ELEENSLPVCESCLEGKMTKRPF+GKG+RAKEPLELVHSDLCGPMNVKARGG+EYF+
Subjt: KNQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFV
Query: SFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTEF
+F DDYSRYGY+YLM KSE LEKFKEYK EVEN L K++KT RS+RG EYMD +F
Subjt: SFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTEF
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| KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa] | 5.8e-67 | 79.49 | Show/hide |
Query: KNQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFV
K T+ K+ K+SPKENAHLWHLRLGHINL RIE+LVK+GLL+ELEENSLPVCESCLEGKMTKRPF+GKG+RAKEPLELVHSDLCGPMNVKARGG+EYF+
Subjt: KNQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFV
Query: SFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTEF
+F DDYSRYGY+YLM KSE LEKFKEYK EVEN L K++KT RS+RG EYMD +F
Subjt: SFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTEF
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| TYJ96675.1 gag/pol protein [Cucumis melo var. makuwa] | 3.0e-71 | 50.83 | Show/hide |
Query: MSDVLAKKHELMVSAKEIMESLRNVWAAVLFGRHDSLKSFSTPRMKEGRRPS----------KECRGKCCLTVLSRGSTCRMKLVAPSRPSE--EEDEEG
+S+VL KKHE M++A + E + N+ H ++ + + E R S + R K + RGST K V S ++ ++ + G
Subjt: MSDVLAKKHELMVSAKEIMESLRNVWAAVLFGRHDSLKSFSTPRMKEGRRPS----------KECRGKCCLTVLSRGSTCRMKLVAPSRPSE--EEDEEG
Query: KSDRLCRQEARRSRRLRERK-VFPPCNGAILWRETVPKFTVERK--NQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCES
+ ++ A+ ++ + K + CN W+ PK+ E+K Q T+ K+ +SP+ENAHLWHLRLGH+NL RIEKLVK+GLL+ELEENSLPVCES
Subjt: KSDRLCRQEARRSRRLRERK-VFPPCNGAILWRETVPKFTVERK--NQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCES
Query: CLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTE
CLEGKMTKRPF+GKG+ +KEPLELVHSDLCGPMN KARGG+EYF++F DDYSRYGY+YLM KSE LEKFKEYK EVEN L K++KT RS+RG EYMD +
Subjt: CLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTE
Query: F
F
Subjt: F
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| TYJ96910.1 gag/pol protein [Cucumis melo var. makuwa] | 3.1e-68 | 60.62 | Show/hide |
Query: RGSTCRMKLVAPSRPSE--EEDEEGKSDRLCRQEARRSRRLRERK-VFPPCNGAILWRETVPKFTVERK--NQETRTKKAKVSPKENAHLWHLRLGHINL
RGST K + S ++ ++++ G+ +++ A+ S++ + K + CN W+ PK+ E+K Q T+ K+ ++SPKENAHLWHLRL HINL
Subjt: RGSTCRMKLVAPSRPSE--EEDEEGKSDRLCRQEARRSRRLRERK-VFPPCNGAILWRETVPKFTVERK--NQETRTKKAKVSPKENAHLWHLRLGHINL
Query: KRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKT
RIE+LV++GLL+ELEEN LPVCESCLEGKMTKRPF+GKG+RAKEPLELVHSDLCGPMNVKARGG+EYF++F DDYSRYGY+YLM KSE LEKFKEYK
Subjt: KRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKT
Query: EVENLLGKSLKTLRSNRGREYMDTEF
EVEN L K++KT RS+RG EYMD +F
Subjt: EVENLLGKSLKTLRSNRGREYMDTEF
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SMH8 Gag/pol protein | 2.8e-67 | 79.49 | Show/hide |
Query: KNQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFV
K T+ K+ K+SPKENAHLWHLRLGHINL RIE+LVK+GLL+ELEENSLPVCESCLEGKMTKRPF+GKG+RAKEPLELVHSDLCGPMNVKARGG+EYF+
Subjt: KNQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFV
Query: SFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTEF
+F DDYSRYGY+YLM KSE LEKFKEYK EVEN L K++KT RS+RG EYMD +F
Subjt: SFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTEF
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| A0A5A7SWF4 Gag/pol protein | 1.4e-71 | 50.83 | Show/hide |
Query: MSDVLAKKHELMVSAKEIMESLRNVWAAVLFGRHDSLKSFSTPRMKEGRRPS----------KECRGKCCLTVLSRGSTCRMKLVAPSRPSE--EEDEEG
+S+VL KKHE M++A + E + N+ H ++ + + E R S + R K + RGST K V S ++ ++ + G
Subjt: MSDVLAKKHELMVSAKEIMESLRNVWAAVLFGRHDSLKSFSTPRMKEGRRPS----------KECRGKCCLTVLSRGSTCRMKLVAPSRPSE--EEDEEG
Query: KSDRLCRQEARRSRRLRERK-VFPPCNGAILWRETVPKFTVERK--NQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCES
+ ++ A+ ++ + K + CN W+ PK+ E+K Q T+ K+ +SP+ENAHLWHLRLGH+NL RIEKLVK+GLL+ELEENSLPVCES
Subjt: KSDRLCRQEARRSRRLRERK-VFPPCNGAILWRETVPKFTVERK--NQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCES
Query: CLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTE
CLEGKMTKRPF+GKG+ +KEPLELVHSDLCGPMN KARGG+EYF++F DDYSRYGY+YLM KSE LEKFKEYK EVEN L K++KT RS+RG EYMD +
Subjt: CLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTE
Query: F
F
Subjt: F
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| A0A5D3BAN6 Gag/pol protein | 1.5e-68 | 60.62 | Show/hide |
Query: RGSTCRMKLVAPSRPSE--EEDEEGKSDRLCRQEARRSRRLRERK-VFPPCNGAILWRETVPKFTVERK--NQETRTKKAKVSPKENAHLWHLRLGHINL
RGST K + S ++ ++++ G+ +++ A+ S++ + K + CN W+ PK+ E+K Q T+ K+ ++SPKENAHLWHLRL HINL
Subjt: RGSTCRMKLVAPSRPSE--EEDEEGKSDRLCRQEARRSRRLRERK-VFPPCNGAILWRETVPKFTVERK--NQETRTKKAKVSPKENAHLWHLRLGHINL
Query: KRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKT
RIE+LV++GLL+ELEEN LPVCESCLEGKMTKRPF+GKG+RAKEPLELVHSDLCGPMNVKARGG+EYF++F DDYSRYGY+YLM KSE LEKFKEYK
Subjt: KRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKT
Query: EVENLLGKSLKTLRSNRGREYMDTEF
EVEN L K++KT RS+RG EYMD +F
Subjt: EVENLLGKSLKTLRSNRGREYMDTEF
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| A0A5D3BDY3 Gag/pol protein | 1.4e-71 | 50.83 | Show/hide |
Query: MSDVLAKKHELMVSAKEIMESLRNVWAAVLFGRHDSLKSFSTPRMKEGRRPS----------KECRGKCCLTVLSRGSTCRMKLVAPSRPSE--EEDEEG
+S+VL KKHE M++A + E + N+ H ++ + + E R S + R K + RGST K V S ++ ++ + G
Subjt: MSDVLAKKHELMVSAKEIMESLRNVWAAVLFGRHDSLKSFSTPRMKEGRRPS----------KECRGKCCLTVLSRGSTCRMKLVAPSRPSE--EEDEEG
Query: KSDRLCRQEARRSRRLRERK-VFPPCNGAILWRETVPKFTVERK--NQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCES
+ ++ A+ ++ + K + CN W+ PK+ E+K Q T+ K+ +SP+ENAHLWHLRLGH+NL RIEKLVK+GLL+ELEENSLPVCES
Subjt: KSDRLCRQEARRSRRLRERK-VFPPCNGAILWRETVPKFTVERK--NQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCES
Query: CLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTE
CLEGKMTKRPF+GKG+ +KEPLELVHSDLCGPMN KARGG+EYF++F DDYSRYGY+YLM KSE LEKFKEYK EVEN L K++KT RS+RG EYMD +
Subjt: CLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTE
Query: F
F
Subjt: F
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| A0A5D3CPJ6 Gag/pol protein | 2.8e-67 | 79.49 | Show/hide |
Query: KNQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFV
K T+ K+ K+SPKENAHLWHLRLGHINL RIE+LVK+GLL+ELEENSLPVCESCLEGKMTKRPF+GKG+RAKEPLELVHSDLCGPMNVKARGG+EYF+
Subjt: KNQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFV
Query: SFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTEF
+F DDYSRYGY+YLM KSE LEKFKEYK EVEN L K++KT RS+RG EYMD +F
Subjt: SFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTEF
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 5.7e-17 | 35.57 | Show/hide |
Query: KENAHLWHLRLGHIN------LKRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRA--KEPLELVHSDLCGPMNVKARGGYEYFVSFIDDY
K N LWH R GHI+ +KR LLN L E S +CE CL GK + PF + K PL +VHSD+CGP+ YFV F+D +
Subjt: KENAHLWHLRLGHIN------LKRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRA--KEPLELVHSDLCGPMNVKARGGYEYFVSFIDDY
Query: SRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTE
+ Y YL+ KS+ F+++ + E + L + GREY+ E
Subjt: SRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTE
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.7e-24 | 34.68 | Show/hide |
Query: GAILWRETVPKFTVERKNQETRTKKAKVSPKE-NAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSD
G+++ + V + T+ R N E + + E + LWH R+GH++ K ++ L K L++ + ++ C+ CL GK + F R L+LV+SD
Subjt: GAILWRETVPKFTVERKNQETRTKKAKVSPKE-NAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSD
Query: LCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTEF
+CGPM +++ GG +YFV+FIDD SR ++Y++ K + + F+++ VE G+ LK LRS+ G EY EF
Subjt: LCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYMDTEF
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 2.1e-11 | 28.9 | Show/hide |
Query: VPKFTVERKNQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLP-------VCESCLEGKMTKRPFSGKGYRAK-----EPLELV
+ K T+ N K+K K L H LGH N + I+K +K + L+E+ + C CL GK TK KG R K EP + +
Subjt: VPKFTVERKNQETRTKKAKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELEENSLP-------VCESCLEGKMTKRPFSGKGYRAK-----EPLELV
Query: HSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSE--TLEKFKEYKTEVENLLGKSLKTLRSNRGREY
H+D+ GP++ + YF+SF D+ +R+ ++Y +H + E L F ++N + ++ +RG EY
Subjt: HSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKSE--TLEKFKEYKTEVENLLGKSLKTLRSNRGREY
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 3.2e-12 | 29.86 | Show/hide |
Query: AKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELE-ENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSR
A S K WH RLGH + ++ + L+ L + C CL K K PFS + PLE ++SD+ + + Y Y+V F+D ++R
Subjt: AKVSPKENAHLWHLRLGHINLKRIEKLVKSGLLNELE-ENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSR
Query: YGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYM
Y ++Y + +KS+ E F +K +EN + T S+ G E++
Subjt: YGYIYLMHKKSETLEKFKEYKTEVENLLGKSLKTLRSNRGREYM
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.1e-12 | 31.58 | Show/hide |
Query: WHLRLGHINLKRIEKLVKSGLLNELE-ENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKS
WH RLGH +L + ++ + L L + L C C K K PFS + +PLE ++SD+ + + Y Y+V F+D ++RY ++Y + +KS
Subjt: WHLRLGHINLKRIEKLVKSGLLNELE-ENSLPVCESCLEGKMTKRPFSGKGYRAKEPLELVHSDLCGPMNVKARGGYEYFVSFIDDYSRYGYIYLMHKKS
Query: ETLEKFKEYKTEVENLLGKSLKTLRSNRGREYM
+ + F +K+ VEN + TL S+ G E++
Subjt: ETLEKFKEYKTEVENLLGKSLKTLRSNRGREYM
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