; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0022855 (gene) of Snake gourd v1 genome

Gene IDTan0022855
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG07:52423918..52449590
RNA-Seq ExpressionTan0022855
SyntenyTan0022855
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025774.1 hypothetical protein E6C27_scaffold34G00210 [Cucumis melo var. makuwa]1.6e-0456Show/hide
Query:  GYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP
        G +  +   + P+A  YRVH G +LL TLSVL DN AVVEIE PVP+ LP
Subjt:  GYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP

KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-1258.23Show/hide
Query:  SVEFESEALLGMVGKLIEFPRTCMKKSPRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP
        S + ESEA LG VGKLI++P T MK  PRG R S+Q + L + +       + LLSTLSVLRDN AVVEIELPVP+ LP
Subjt:  SVEFESEALLGMVGKLIEFPRTCMKKSPRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]7.6e-0745.26Show/hide
Query:  SVEFESEALLGMVGKLIEFPRTCMKKSPRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAV----------------VEIELPVPENLP
        S + ESEAL  MVGKLI++P T MK  PRG R S+Q   L + +       +  LSTLSVL DN  V                VEIELPVP+ LP
Subjt:  SVEFESEALLGMVGKLIEFPRTCMKKSPRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAV----------------VEIELPVPENLP

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-1258.23Show/hide
Query:  SVEFESEALLGMVGKLIEFPRTCMKKSPRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP
        S + ESEA LG VGKLI++P T MK  PRG R S+Q + L + +       + LLSTLSVLRDN AVVEIELPVP+ LP
Subjt:  SVEFESEALLGMVGKLIEFPRTCMKKSPRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.6e-0459.62Show/hide
Query:  PRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP
        PRG RSS+Q   L + +       + LLSTLSVLRDN AVVEIELPVP+ LP
Subjt:  PRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP

TrEMBL top hitse value%identityAlignment
A0A5A7SJC7 Uncharacterized protein7.7e-0556Show/hide
Query:  GYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP
        G +  +   + P+A  YRVH G +LL TLSVL DN AVVEIE PVP+ LP
Subjt:  GYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP

A0A5A7T223 Reverse transcriptase7.7e-1358.23Show/hide
Query:  SVEFESEALLGMVGKLIEFPRTCMKKSPRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP
        S + ESEA LG VGKLI++P T MK  PRG R S+Q + L + +       + LLSTLSVLRDN AVVEIELPVP+ LP
Subjt:  SVEFESEALLGMVGKLIEFPRTCMKKSPRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP

A0A5A7TPS6 Retrotrans_gag domain-containing protein3.7e-0745.26Show/hide
Query:  SVEFESEALLGMVGKLIEFPRTCMKKSPRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAV----------------VEIELPVPENLP
        S + ESEAL  MVGKLI++P T MK  PRG R S+Q   L + +       +  LSTLSVL DN  V                VEIELPVP+ LP
Subjt:  SVEFESEALLGMVGKLIEFPRTCMKKSPRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAV----------------VEIELPVPENLP

A0A5D3BV68 Reverse transcriptase7.7e-1358.23Show/hide
Query:  SVEFESEALLGMVGKLIEFPRTCMKKSPRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP
        S + ESEA LG VGKLI++P T MK  PRG R S+Q + L + +       + LLSTLSVLRDN AVVEIELPVP+ LP
Subjt:  SVEFESEALLGMVGKLIEFPRTCMKKSPRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP

A0A5D3BZ50 Pentatricopeptide repeat-containing protein2.2e-0459.62Show/hide
Query:  PRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP
        PRG RSS+Q   L + +       + LLSTLSVLRDN AVVEIELPVP+ LP
Subjt:  PRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTTTGGTTGTACTGGTCTGTAGAGTTCGAATCAGAAGCTCTATTAGGTATGGTTGGAAAGCTTATCGAATTTCCTAGAACTTGCATGAAGAAATCGCCAAGAGG
ATATAGGTCGAGTGTACAGGCCAAGGTTCTACCCGAGGCTTTATGGTACCGTGTGCACAAAGGTCTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTG
TCGTAGAGATCGAGCTCCCGGTGCCTGAGAACCTGCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGTTTTGGTTGTACTGGTCTGTAGAGTTCGAATCAGAAGCTCTATTAGGTATGGTTGGAAAGCTTATCGAATTTCCTAGAACTTGCATGAAGAAATCGCCAAGAGG
ATATAGGTCGAGTGTACAGGCCAAGGTTCTACCCGAGGCTTTATGGTACCGTGTGCACAAAGGTCTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGCGCTG
TCGTAGAGATCGAGCTCCCGGTGCCTGAGAACCTGCCATAG
Protein sequenceShow/hide protein sequence
MVFWLYWSVEFESEALLGMVGKLIEFPRTCMKKSPRGYRSSVQAKVLPEALWYRVHKGLILLSTLSVLRDNSAVVEIELPVPENLP